Source: miniasm Maintainer: Debian Med Packaging Team Uploaders: Sascha Steinbiss Section: science Priority: optional Build-Depends: debhelper (>= 9), zlib1g-dev Standards-Version: 3.9.8 Testsuite: autopkgtest Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/miniasm.git Vcs-Git: https://anonscm.debian.org/git/debian-med/miniasm.git Homepage: https://github.com/lh3/miniasm Package: miniasm Architecture: any Recommends: minimap Depends: ${misc:Depends}, ${shlibs:Depends}, zlib1g Description: ultrafast de novo assembler for long noisy DNA sequencing reads Miniasm is an experimental very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw input reads.