Source: multiqc
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>,
 Steffen Moeller <moeller@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
               python3-all,
               dh-python,
               python3-setuptools,
               python3-click,
               python3-lzstring,
               python3-jinja2,
               python3-matplotlib,
               python3-markdown,
               python3-numpy,
               python3-yaml,
               python3-requests,
               python3-simplejson,
               python3-spectra,
               python3-coloredlogs <!nocheck>,
               python3-humanfriendly (>= 8.1-2) <!nocheck>,
               python3-rich  <!nocheck>,
               python3-rich-click <!nocheck>
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/multiqc
Vcs-Git: https://salsa.debian.org/med-team/multiqc.git
Homepage: https://multiqc.info/
Rules-Requires-Root: no

Package: multiqc
Architecture: all
Depends: ${python3:Depends},
         ${misc:Depends},
         python3-click,
         python3-distutils,
         python3-lzstring,
         python3-jinja2,
         python3-matplotlib,
         python3-markdown,
         python3-numpy,
         python3-yaml,
         python3-requests,
         python3-simplejson,
         python3-spectra,
         python3-coloredlogs,
         python3-humanfriendly (>= 8.1-2),
         python3-rich,
         fonts-glyphicons-halflings,
         libjs-bootstrap,
         libjs-jquery,
         libjs-jquery-tablesorter,
         libjs-jquery-ui,
Recommends:
         node-clipboard,
         libjs-filesaver,
         pandoc,
         texlive-xetex,
Enhances:
         adapterremoval,
         afterqc,
         bamtools,
         bbmap,
         bcftools,
         bcl2fastq,
         biobambam2,
         biobloomtools,
         biscuit,
         bismark,
         bowtie,
         bowtie2,
         busco,
         clipandmerge,
         clusterflow,
         conpair,
         cutadapt,
         damageprofiler,
         dedup,
         deeptools,
         disambiguate,
         dragen,
         fastp,
         fastq-screen,
         fastqc,
         featurecounts,
         fgbio,
         flash,
         flexbar,
         gatk,
         goleft-indexcov,
         happy,
         hicexplorer,
         hicpro,
         hicup,
         hisat2,
         homer,
         htseq,
         interop,
         ivar,
         jellyfish,
         kaiju,
         kallisto,
         kat,
         kraken,
         leehom,
         longranger,
         macs2,
         malt,
         methylqa,
         minionqc,
         mirtop,
         mirtrace,
         mosdepth,
         mtnucratio,
         multivcfanalyzer,
         peddy,
         phantompeakqualtools,
         picard-tools,
         preseq,
         prokka,
         pycoqc,
         qorts,
         qualimap,
         quast,
         rna-seqc,
         rockhopper,
         rsem,
         rseqc,
         salmon,
         samblaster,
         samtools,
         sargasso,
         seqyclean,
         sexdeterrmine,
         sickle,
         skewer,
         slamdunk,
         snpeff,
         snpsplit,
         somalier,
         sortmerna,
         stacks,
         rna-star,
         supernova,
         theta2,
         tophat,
         trimmomatic,
         varscan2,
         vcftools,
         verifybamid
Description: output integration for RNA sequencing across tools and samples
 The sequencing of DNA or RNA with current high-throughput technologies
 involves an array of tools and these are applied over a range of samples.
 It is easy to loose oversight. And gathering the data and forwarding
 them in a readable manner to the individuals who took the samples is
 a challenge for a tool in itself. Well. Here it is.
 MultiQC aggregates the output of multiple tools into a single report.
 .
 Reports are generated by scanning given directories for recognised log
 files. These are parsed and a single HTML report is generated summarising
 the statistics for all logs found. MultiQC reports can describe multiple
 analysis steps and large numbers of samples within a single plot, and
 multiple analysis tools making it ideal for routine fast quality control.

#  Needs more love
#Package: python-multiqc-doc
#Architecture: all
#Section: doc
#Depends: ${sphinxdoc:Depends}, ${misc:Depends}
#Description: MultiQC biological sequencing QA (common documentation)
# Markdown documentation for MultiQC.