nanopolish (0.14.0-1) unstable; urgency=medium * Team Upload. [ Andreas Tille ] * New upstream version * Standards-Version: 4.6.1 (routine-update) [ Nilesh Patra ] * Add opt to link against external slow5lib * B-D on libslow5lib * d/rules: export SLOW5LIB=external -- Nilesh Patra Sat, 09 Jul 2022 23:37:52 +0530 nanopolish (0.13.3-2) unstable; urgency=medium * Team Upload. * d/rules: Explicitly call $(MAKE) on nanopolish_test so as to vendor the same even when nocheck is enabled (Closes: #983767) * Bump Standards-Version to 4.6.0 (no changes needed) * Bump debhelper compatibility level to 13 * Bump watch file version to 4 -- Nilesh Patra Wed, 25 Aug 2021 01:51:10 +0530 nanopolish (0.13.3-1) unstable; urgency=medium * Team Upload. * New upstream version 0.13.3 * Refresh and remove merged patches * Update Manpages -- Nilesh Patra Sun, 15 Aug 2021 18:08:24 +0530 nanopolish (0.13.2-3) unstable; urgency=medium * Since we need the executable createt inside build time test in autopkgtest this is enforced in dh_auto_build to circumvent nocheck. Closes: #983767 -- Andreas Tille Mon, 01 Mar 2021 16:39:39 +0100 nanopolish (0.13.2-2) unstable; urgency=medium * Team upload. * Patch code to not define PR_R7 and PT_R9 to avoid FTBFS on some archs (Closes: #960634) Thanks to Barry Arndt for the hint. -- Sascha Steinbiss Sat, 20 Feb 2021 15:06:55 +0100 nanopolish (0.13.2-1) unstable; urgency=medium [ Michael R. Crusoe ] * Team upload. * New upstream version * Enable building anywhere, there are no longer any SIMD intrinsics -- Steffen Moeller Sun, 03 May 2020 19:25:27 +0200 nanopolish (0.12.1-2) unstable; urgency=medium * Versioned Build-Depends against libminimap2-dev (>= 2.17+dfsg-8) (Thanks to Hamid Nassiby) Closes: #958081 -- Andreas Tille Sat, 18 Apr 2020 18:51:43 +0200 nanopolish (0.12.1-1) unstable; urgency=medium * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set upstream metadata fields: Bug-Submit. (routine-update) * Introduced dependency on libminimap2-dev -- Steffen Moeller Sat, 14 Mar 2020 15:58:17 +0100 nanopolish (0.11.3-1) unstable; urgency=medium * Team upload. * New upstream version -- Steffen Moeller Sat, 21 Dec 2019 19:10:21 +0100 nanopolish (0.11.2-1) unstable; urgency=medium [ Michael R. Crusoe ] * New upstream release Closes: #931784, #937105 * debhelper-compat 12 * Added patch to fixed #! for the python scripts * Set upstream metadata fields: Repository. [ Andreas Tille ] * Standards-Version: 4.4.1 * Set upstream metadata fields: Bug-Database, Repository-Browse. * Unify autopkgtest -- Andreas Tille Wed, 11 Dec 2019 15:48:48 +0100 nanopolish (0.11.1-1) unstable; urgency=medium * Afif Elghraoui removed himself from Uploaders * Add myself to Uploaders * Make nanopolish_makerange accessible in /usr/bin * Asked upstrem for Python3 port https://github.com/jts/nanopolish/issues/626 * New upstream version -- Andreas Tille Wed, 10 Jul 2019 13:12:23 +0200 nanopolish (0.11.0-2) unstable; urgency=medium * Team upload. [ Matthias Klose ] * Fix autopkg test. * Fix autopkg test dependency. [ Andreas Tille ] * Secure URI in copyright format * Remove trailing whitespace in debian/copyright -- Andreas Tille Sun, 27 Jan 2019 11:27:03 +0100 nanopolish (0.11.0-1) unstable; urgency=medium * Team upload. * Recommends: python-pysam, python-biopython * debhelper 12 * Standards-Version: 4.3.0 * Fix permissions * Fix path for Python interpreter * Better care for Python scripts -- Andreas Tille Thu, 24 Jan 2019 09:11:19 +0100 nanopolish (0.10.2-1) unstable; urgency=medium * Team upload. * New upstream version * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 * Fix path for Perl interpreter * Enhance long description -- Andreas Tille Thu, 13 Sep 2018 11:37:24 +0200 nanopolish (0.9.0-1) unstable; urgency=medium * New upstream version * Refresh patches * Bump upstream copyright year * Bump minimum required fast5 version * Include upstream patch to fix HDF5 errors appearing in autopkgtest -- Afif Elghraoui Sat, 17 Feb 2018 22:02:10 -0500 nanopolish (0.8.5-2) unstable; urgency=low * Remove dependency on nonexistent package sse-support [i386] -- Afif Elghraoui Sun, 04 Feb 2018 19:38:40 -0500 nanopolish (0.8.5-1) unstable; urgency=medium * New upstream version * d/control: + Add sse-support to Build-Depends for i386 + Remove explicit declaration of x32 * Bump Standards-Version to 4.1.3 * Drop patches applied upstream * Drop useless patch * Bump copyright years -- Afif Elghraoui Sun, 04 Feb 2018 16:17:01 -0500 nanopolish (0.8.4-1) unstable; urgency=medium [ Steffen Moeller ] * upstream/metadata RRID->SciCrunch [ Afif Elghraoui ] * New upstream version * Bump fast5 minimum version * Update and refine patch stack * Improve handling of external dependencies and build flags * d/rules + Remove redundant LDFLAGS setting + Don't override upstream optimization flags with default -O2 * Bump Standards-Version to 4.1.1 -- Afif Elghraoui Sat, 11 Nov 2017 00:45:23 -0500 nanopolish (0.8.1-2) unstable; urgency=medium * Team upload. * Hack around broken clean target which tries to build dependencies from external sources * DEP3 * Fix path tp hdf5 lib on i386 (thanks for the hint to Christian Seiler ) * Restrict Architectures: any-amd64 any-i386 x32 since immintrin.h is a x86/amd64 specific header for intrinsics not available on other architectures (Thanks for the hint to Gert Wollny ) * Depends: sse-support [any-i386] (thanks for the hint to Christian Seiler ) -- Andreas Tille Tue, 19 Sep 2017 15:37:43 +0200 nanopolish (0.8.1-1) unstable; urgency=medium [ Steffen Moeller ] * Team upload * New upstream version (Closes: #853568) - bumped dependency on fast5 to 0.6.2 - established compatibility with gcc/g++ 7 - needed some extra persuasion to not download eigen library. - added link-time optimisation * debian/upstream/metadata: Added references to registries [ Andreas Tille ] * debhelper 10 * Standards-Version: 4.1.0 (no changes needed) -- Steffen Moeller Thu, 14 Sep 2017 16:59:29 +0200 nanopolish (0.5.0-1) unstable; urgency=medium * Imported Upstream version 0.5.0 - Refresh and update patches - Add build dependency on libeigen3 - Fix "clean" target * Update email address and copyright year * Fix compatibility with fast5 0.5.6 -- Afif Elghraoui Fri, 12 Aug 2016 00:05:16 -0700 nanopolish (0.4.0-3) unstable; urgency=medium * Team upload. * Make build reproducible. -- Sascha Steinbiss Mon, 08 Aug 2016 12:34:56 +0000 nanopolish (0.4.0-2) unstable; urgency=medium * Team upload. * Fix FTBFS with GCC 6 (Closes: #831151) * Enable full hardening. * Fix Vcs-Browser link. * Use secure Vcs-*. * Bump Standards-Version. -- Sascha Steinbiss Fri, 05 Aug 2016 20:51:28 +0000 nanopolish (0.4.0-1) unstable; urgency=low * Initial release (Closes: #811458) -- Afif Elghraoui Wed, 20 Jan 2016 19:53:16 -0800