Source: nanopolish
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
               dh-python,
               python3,
               zlib1g-dev,
               libfast5-dev,
               libhts-dev,
               libeigen3-dev,
               libminimap2-dev,
               libstreamvbyte-dev,
               libslow5-dev
Standards-Version: 4.6.1
Vcs-Browser: https://salsa.debian.org/med-team/nanopolish
Vcs-Git: https://salsa.debian.org/med-team/nanopolish.git
Homepage: https://github.com/jts/nanopolish
Rules-Requires-Root: no

Package: nanopolish
Architecture: any
Depends: ${shlibs:Depends},
         ${misc:Depends},
         ${python3:Depends},
         ${perl:Depends}
Recommends: python3-biopython,
            python3-pysam
Suggests: perl,
          make
Description: consensus caller for nanopore sequencing data
 Nanopolish uses a signal-level hidden Markov model for consensus calling
 of nanopore genome sequencing data. It can perform signal-level analysis
 of Oxford Nanopore sequencing data. Nanopolish can calculate an improved
 consensus sequence for a draft genome assembly, detect base
 modifications, call SNPs and indels with respect to a reference genome
 and more.