Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Contact: toolbox@ncbi.nlm.nih.gov Upstream-Name: ncbi Source: http://ftp.ncbi.nih.gov/toolbox/ncbi_tools/old/ Files-Excluded: ncbi/data/UniVec.* Files: * Copyright: 1996-2017 NCBI License: public_domain Files: algo/blast/core/boost_erf.c Copyright: 2006 John Maddock License: BSL-1.0 Files: connect/mitsock/* Copyright: 1998-1999 The Massachusetts Institute of Technology License: MIT Files: connect/mitsock/OTErrno.c connect/mitsock/OTnetdb.c connect/mitsock/sock_ext.h Copyright: ???? National Center for Supercomputing Applications License: NCSA Files: connect/mitsock/a_inet.h Copyright: 1983 Regents of the University of California License: BSD-3-Clause Files: connect/mitsock/carbon_netdb.h Copyright: 1980, 1983, 1988 Regents of the University of California License: BSD-3-Clause Files: connect/mitsock/neterrno.h Copyright: 1982, 1986, 1989 Regents of the University of California License: BSD-3-Clause Files: connect/mitsock/neti_in.h Copyright: 1982, 1986, 1990 Regents of the University of California License: BSD-3-Clause Files: connect/mitsock/s_types.h Copyright: 1982 Regents of the University of California License: BSD-3-Clause Files: connect/parson.? Copyright: 2012-2016 Krzysztof Gabis License: Expat Files: corelib/regex.c Copyright: 1993 Free Software Foundation, Inc. License: GPL-2+ Files: corelib/regex.h Copyright: 1985, 1989, 1990, 1991, 1992, 1993 Free Software Foundation, Inc. License: GPL-2+ Files: debian/* Copyright: 1998-1999 Stephane Bortzmeyer 2001 Dr. Guenter Bechly 2001-2019 Aaron M. Ucko 2012-2019 Andreas Tille License: public_domain Files: debian/tests/test-data/* Copyright: 1996-2018 NCBI License: public_domain Comment: nc0225.aso.gz and dsRNA_viruses.* can be downloaded by running: wget ftp://ftp.ncbi.nih.gov/ncbi-asn1/daily-nc/nc0225.aso.gz wget ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/ASN_BINARY/Viruses/dsRNA_viruses.ags.gz wget ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/GENE_INFO/Viruses/dsRNA_viruses.gene_info.gz . spidey_* can be downloaded using their accession numbers with help of idfetch, e.g.: idfetch -dn -t 5 -c 1 -g 1327850419 -o spidey_mRNA.fasta idfetch -dn -t 5 -c 1 -g 568802167 -o spidey_genome.fasta . Based on the example provided in /usr/share/doc/ncbi-tools-bin/tbl2asn.txt.gz, Sc_16.sbt was generated using NCBI Submission Portal: https://submit.ncbi.nlm.nih.gov/genbank/template/submission/ . The examples for Sc_16.fsa and Sc_16.tbl were taken from here: https://www.ncbi.nlm.nih.gov/genbank/tbl2asn2/ Files: debian/tests/test-data/trnascan-se_sample.output Copyright: 2018 Liubov Chuprikova License: public_domain Comment: The file was generated by tRNAscan-SE 2.0: tRNAscan-SE -d -y -o trnascan-se_sample.output /usr/share/doc/trnascan-se/examples/Example1.fa License: public_domain The NCBI toolkit has been put into the public domain, completely unfettered: . PUBLIC DOMAIN NOTICE National Center for Biotechnology Information . This software/database is a "United States Government Work" under the terms of the United States Copyright Act. It was written as part of the author's official duties as a United States Government employee and thus cannot be copyrighted. This software/database is freely available to the public for use. The National Library of Medicine and the U.S. Government have not placed any restriction on its use or reproduction. . 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