#!/usr/bin/make -f
DEB_VERSION=$(shell dpkg-parsechangelog | awk '/^Version:/ { print $$2 }')
export NCBI_VERSION_FULL=$(DEB_VERSION)
export NCBI_VERSION=$(word 1, $(subst -, ,$(NCBI_VERSION_FULL)))
export NCBI_VERSION_MAJOR=$(word 1, $(subst ., ,$(NCBI_VERSION)))
export NCBI_VERSION_MINOR=$(NCBI_VERSION:$(NCBI_VERSION_MAJOR).%=%)
export NCBI_VERSION_DATE =$(word 3, $(subst ., ,$(NCBI_VERSION)))
export NCBI_VERSION_DEBREL=$(word 2, $(subst -, ,$(NCBI_VERSION_FULL)))
export NCBI_VERSION_SHLIB=$(NCBI_VERSION:%+dfsg1=%)
testversions:
env | fgrep NCBI_VERSION
# Set these here, rather than using the csh hackage that passes for an
# upstream build system. Mostly taken from ../platform/{ppc,}linux.ncbi.mk.
include /usr/share/dpkg/buildtools.mk
VIBFLAG = -DWIN_MOTIF
VIBLIBS = -lXm -lXmu -lXt -lX11 # -lXext # -lXp
OTHERLIBS = -lm
RANLIB = ranlib
MT_OTHERLIBS = -lpthread
THREAD_OBJ = ncbithr.o
NETENTREZVERSION = 2.02c2ASN1SPEC6
export DEB_BUILD_MAINT_OPTIONS=hardening=+all
CFLAGS := $(shell dpkg-buildflags --get CFLAGS) -Wall \
$(shell dpkg-buildflags --get CPPFLAGS)
ifeq ($(DEB_HOST_ARCH),alpha)
CFLAGS += -mieee
endif
CFLAGS_PIC = $(filter-out -fPIE,$(CFLAGS)) -fPIC
LDFLAGS := $(shell dpkg-buildflags --get LDFLAGS)
LDFLAGS1 := $(CFLAGS) $(LDFLAGS) -Wl,--as-needed -Wl,-rpath-link,../shlib
OGL_TARGETS = Cn3D
OGL_LIBVARS = LIB400=libvibrantOGL.a LIB3000=libncbicn3dOGL.a
OGLLIBS = -lGLU -lGL
PNG_INCLUDE = -D_PNG
PNG_LIBS = -lpng # -lz
USESHLIB = NCBI_LINKINGLIBDIR="../shlib"
MAKESHLIB = $(USESHLIB) NCBI_SHLIBS=shlib
# Controls how shared libraries are built; appropriate for ELF w/GNU tools.
export NCBI_LBSM_SRC=ncbi_lbsmd_stub.c
export NCBI_LBSM_OBJ=ncbi_lbsmd_stub.o
VIB = Psequin sbtedit udv ddv taxblast idfetch asn2gb tbl2asn gene2xml \
entrez2 gbseqget asn2all asn2asn asn2fsa asn2xml asndisc asnmacro \
asnval cleanasn insdseqget nps2gps spidey trna2sap trna2tbl \
$(OGL_TARGETS)
#OTHERS = others
OTHERS = libncbimla.a libnetblast.a libncbitxc2.a libncbiid1.a shlib
COMMON_FLAGS = LCL=lnx CC="$(CC)" LDFLAGS1="$(LDFLAGS1)" RAN="$(RANLIB)"
COMMON_FLAGS += OTHERLIBS="$(OTHERLIBS)" VIBLIBS="$(VIBLIBS)"
COMMON_FLAGS += VIBFLAG="$(VIBFLAG)" GNUTLS_INCLUDE=-DHAVE_LIBGNUTLS
ICONS = debian/asntool.xpm debian/ncbilogo.xpm
MAKE_IN_BUILD = $(MAKE) -C build
%:
dh $@
# Explicit rule to avoid an infinite loop
build:
dh $@
override_dh_auto_build-arch:
cd build && ln -s ../make/*.unx .
ln -s ../make/ln-if-absent build
mv build/makeall.unx build/makefile
$(MAKE_IN_BUILD) all $(COMMON_FLAGS) $(USESHLIB) \
CFLAGS1="-c $(CFLAGS_PIC) $(PNG_INCLUDE)" \
LIB4=libvibrant.a LIB20=libncbidesk.a LIB28=libvibgif.a \
LIB30=libncbicn3d.a LIB45=libddvlib.a $(OGL_LIBVARS)
$(MAKE_IN_BUILD) -f makenet.unx $(COMMON_FLAGS) $(USESHLIB) \
CFLAGS1="-c $(CFLAGS_PIC)" \
LDFLAGS="$(filter-out -fPIE -pie,$(LDFLAGS))" \
NETENTREZVERSION="$(NETENTREZVERSION)" \
BLIB31=libvibnet.a OGLLIBS="$(OGLLIBS) $(PNG_LIBS)" all $(OTHERS)
# Clear out the PIC objects
$(MAKE_IN_BUILD) clean
$(MAKE_IN_BUILD) all $(COMMON_FLAGS) $(USESHLIB) \
CFLAGS1="-c $(CFLAGS) $(PNG_INCLUDE)" \
LIB4=libvibrant.a LIB20=libncbidesk.a LIB28=libvibgif.a \
LIB30=libncbicn3d.a LIB45=libddvlib.a $(OGL_LIBVARS)
# Build demos without vibrant to avoid unnecessary dependencies;
# users who want the Vibrant UI can use vibrate(1).
$(MAKE_IN_BUILD) -f makedemo.unx $(COMMON_FLAGS) $(USESHLIB) \
CFLAGS1="-c $(CFLAGS)" VIBLIBS= VIBFLAG= LIB50=-lpcre
# Don't bother passing OGLLIBS or VIBLIBS, which apps don't use directly.
$(MAKE_IN_BUILD) -f makenet.unx $(COMMON_FLAGS) $(USESHLIB) \
CFLAGS1="-c $(CFLAGS)" THREAD_OBJ="$(THREAD_OBJ)" \
THREAD_OTHERLIBS="$(MT_OTHERLIBS)" \
NETENTREZVERSION="$(NETENTREZVERSION)" BLIB31=libvibnet.a \
OGLLIBS= VIBLIBS= VIB="$(VIB)"
# date > VERSION
override_dh_auto_clean:
-rm -rf build/* bin/* include/* lib/* shlib
mkdir -p build bin include lib
-rm -f debian/*.menu $(ICONS)
chmod -x debian/makemenu debian/installman
DEB_HOST_MULTIARCH ?= $(shell dpkg-architecture -qDEB_HOST_MULTIARCH)
destlibdir=debian/tmp/usr/lib/$(DEB_HOST_MULTIARCH)
icon_in = link/mswin/ncbilogo.ico
hi = debian/ncbi-data/usr/share/icons/hicolor
override_dh_auto_install-arch:
install -d $(destlibdir)
install -m 644 lib/* shlib/*.so.$(NCBI_VERSION_SHLIB) $(destlibdir)
for x in ncbiacc ncbiCacc netentr; do \
rm -f $(destlibdir)/lib$$x.so.$(NCBI_VERSION_SHLIB) && \
ln -s libncbiNacc.so.$(NCBI_VERSION_MAJOR) \
$(destlibdir)/lib$$x.so.$(NCBI_VERSION_MAJOR) && \
ln -s libncbiNacc.so $(destlibdir)/lib$$x.so; \
done
for x in ncbicn3d vibrant; do \
rm -f $(destlibdir)/lib$$x.so.$(NCBI_VERSION_SHLIB) && \
ln -s lib$${x}OGL.so.$(NCBI_VERSION_MAJOR) \
$(destlibdir)/lib$$x.so.$(NCBI_VERSION_MAJOR) && \
ln -s lib$${x}OGL.so $(destlibdir)/lib$$x.so; \
done
rm -f $(destlibdir)/libregexp.*
cd $(destlibdir) && \
for f in *.so.$(NCBI_VERSION_SHLIB); do \
base=`basename $$f .so.$(NCBI_VERSION_SHLIB)` && \
ln -s $$f $$base.so.$(NCBI_VERSION_MAJOR) && \
ln -s $$f $$base.so; \
done
install -d debian/tmp/usr/include/ncbi
cp -LRp include/* debian/tmp/usr/include/ncbi
cd debian/tmp/usr/include/ncbi && \
rm -f FSpCompat.h FullPath.h More*.h Optimization*.h pcre*.h
find debian/tmp/usr/include -type f | xargs chmod 644
install -d debian/tmp/usr/bin
install `find build -type f -perm /111 -print` debian/tmp/usr/bin
rm -f debian/tmp/usr/bin/*test*
rm -f debian/tmp/usr/bin/*demo*
# Useless as a binary, and seems to be broken anyway
rm -f debian/tmp/usr/bin/dosimple
# Seems to be a functional version of sort(1) with no special features
# (but lacking some features of GNU sort)
rm -f debian/tmp/usr/bin/ncbisort
# Obsolete
rm -f debian/tmp/usr/bin/cdscan
rm -f debian/tmp/usr/bin/entrcmd
# install -d debian/tmp/usr/lib/cgi-bin
mv debian/tmp/usr/bin/Cn3D debian/tmp/usr/bin/Cn3D-3.0
# mv debian/tmp/usr/bin/fmerge debian/tmp/usr/bin/fastamerge
override_dh_auto_install-indep:
convert link/mswin/asntool.ico debian/asntool.xpm
icotool -x -w 32 -b 32 -o - $(icon_in) | \
convert png:- debian/ncbilogo.xpm
install -d debian/ncbi-data/etc/ncbi
install -m 644 debian/.*rc debian/ncbi-data/etc/ncbi
install -d debian/ncbi-data/usr/bin
install debian/vibrate debian/ncbi-data/usr/bin
install -d debian/ncbi-data/usr/share/ncbi/data
install -m 644 data/* debian/ncbi-data/usr/share/ncbi/data
install -d debian/ncbi-rrna-data/usr/share/ncbi/data
mv debian/ncbi-data/usr/share/ncbi/data/*_[n9]*.n?? \
debian/ncbi-data/usr/share/ncbi/data/rRNA*.nal \
debian/ncbi-data/usr/share/ncbi/data/Combined16SrRNA.n?? \
debian/ncbi-rrna-data/usr/share/ncbi/data/
install -d debian/ncbi-data/usr/share/pixmaps
install -m 644 $(ICONS) debian/ncbi-data/usr/share/pixmaps
for w in 16 32 48 256; do \
d=$${w}x$${w} && \
install -d $(hi)/$$d && \
icotool -x -w $$w -b 32 -o $(hi)/$$d/ncbilogo.png $(icon_in) \
|| exit 1 ; \
done
override_dh_installchangelogs:
dh_installchangelogs -k README
override_dh_installmenu-arch:
chmod +x debian/makemenu
debian/makemenu debian/ncbi-tools-x11.install
# debian/makemenu -v debian/ncbi-tools-bin.install
dh_installmenu
override_dh_installdocs-arch:
dh_installdocs
install -m 644 config/README \
debian/libncbi6/usr/share/doc/libncbi6/README.config
install -m 644 network/nsclilib/readme \
debian/libncbi6/usr/share/doc/libncbi6/README.net-cfg
install -m 644 doc/fa2htgs/README \
debian/ncbi-tools-bin/usr/share/doc/ncbi-tools-bin/README.fa2htgs
install -m 644 sequin/README \
debian/ncbi-tools-x11/usr/share/doc/ncbi-tools-x11/README.sequin
override_dh_installman:
dh_link # otherwise runs too late to influence debian/installman
chmod +x debian/installman
ifneq "" "$(filter ncbi-tools-bin, $(shell dh_listpackages))"
debian/installman ncbi-tools-bin
debian/installman ncbi-tools-x11
endif
ifneq "" "$(filter ncbi-data, $(shell dh_listpackages))"
debian/installman ncbi-data
endif
dh_installman
override_dh_makeshlibs-arch:
dh_makeshlibs -V
override_dh_builddeb:
dh_builddeb -pncbi-rrna-data -- -Zxz -z7 -Sextreme
dh_builddeb -Nncbi-rrna-data
.PHONY: build