ncbi-vdb (2.10.9+dfsg-2) unstable; urgency=medium * d/p/fix_2.10.9_refseq_race.patch: Fix a new race in asynchronous RefSeq loading code, per upstream (https://github.com/ncbi/ncbi-vdb) commits 06152a5, cf92dca, and b342af2. -- Aaron M. Ucko Mon, 18 Jan 2021 16:57:54 -0500 ncbi-vdb (2.10.9+dfsg-1) unstable; urgency=medium * New upstream version * d/watch: Use filemangle to make sure the archive will not mixed up with other ncbi code with same version * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) -- Andreas Tille Mon, 18 Jan 2021 08:27:11 +0100 ncbi-vdb (2.10.7+dfsg-1) unstable; urgency=medium * New upstream version * Remove trailing whitespace in debian/changelog (routine-update) * debian/not-installed: Update for new release (more test-related files). -- Aaron M. Ucko Tue, 02 Jun 2020 21:35:11 -0400 ncbi-vdb (2.10.6+dfsg-5) unstable; urgency=medium * Comment out fix_parallel_build.patch (evidently insufficient) in favor of overriding dh_prep to spare(!) debian/tmp. * optionally_reinstate_default_schema.patch: Use plain extern rather than SRA_EXTERN to avoid likely multiple definitions under GCC 10. -- Aaron M. Ucko Tue, 26 May 2020 10:32:22 -0400 ncbi-vdb (2.10.6+dfsg-4) unstable; urgency=medium * debian/patches/fix_parallel_build.patch (new): Use unique temporary directory names when combining static libraries. -- Aaron M. Ucko Tue, 26 May 2020 08:06:35 -0400 ncbi-vdb (2.10.6+dfsg-3) unstable; urgency=medium * debian/patches/optionally_reinstate_default_schema.patch: New patch to let callers use the default schema, otherwise dropped upstream as of 2.10.0. (The toggle is a new global variable SRAUseLegacyDefaultSchema, which sra-sdk's tools/sra-load will enable to address the autopkgtest failure #961347.) -- Aaron M. Ucko Mon, 25 May 2020 22:38:23 -0400 ncbi-vdb (2.10.6+dfsg-2) unstable; urgency=medium * Install libs/vfs/services-priv.h as .../services-priv-internal.h to distinguish it from interfaces/vfs/services-priv.h. (Neither can stand in for the other.) * Formally refresh patches that developed offsets. * Factor out a new DSLMFLAGS macro for common d-shlibmove flags; include the libmbedx509-0 quirk there since it will soon be needed everywhere. * Address remaining underlinkage of system libraries (mbed*, z, bz2). At this point, the only remaining unresolved references are of libkdf5 against symbols that could come from either libncbi-vdb or libncbi-wvdb. (Closes: #952623, #952627, #953897.) * Copy headers rather than moving them to allow for consecutive builds. * Fix typo in override_dh_missing name; supply debian/not-installed. * Add myself to Uploaders. -- Aaron M. Ucko Wed, 20 May 2020 22:13:24 -0400 ncbi-vdb (2.10.6+dfsg-1) unstable; urgency=medium * Team upload. * New upstream version * Rules-Requires-Root: no (routine-update) -- Steffen Moeller Mon, 18 May 2020 23:55:32 +0200 ncbi-vdb (2.10.5+dfsg-1) UNRELEASED; urgency=medium * New upstream version [ Andreas TIlle ] * Try even harder to get rid of vdb_mbedtls symbols [ Michael R. Crusoe ] * Update mbedtls patches to 2.10.5 and consolidate them -- Steffen Moeller Mon, 02 Mar 2020 02:04:31 +0100 ncbi-vdb (2.10.3+dfsg-2) unstable; urgency=medium * Removed additional invocations of vdb_mbedtls to avoid undefined references when linking against vdb. -- Steffen Moeller Mon, 02 Mar 2020 01:12:48 +0100 ncbi-vdb (2.10.3+dfsg-1) unstable; urgency=medium [ Steffen Moeller ] * New upstream version * debhelper-compat 12 (routine-update) * Adjusted patches. [ Andreas Tille ] * Standards-Version: 4.5.0 * Architecture: amd64 i386 x32 Closes: #950737 * New upstream version * Add salsa-ci file (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. -- Andreas Tille Mon, 24 Feb 2020 21:49:23 +0100 ncbi-vdb (2.9.3+dfsg-2) unstable; urgency=medium * Replace remainin occurrence of vdb_mbedtls_ssl_conf_authmode by mbedtls_ssl_conf_authmode Closes: #919306 -- Andreas Tille Mon, 14 Jan 2019 21:54:31 +0100 ncbi-vdb (2.9.3+dfsg-1) unstable; urgency=medium * New upstream version * debhelper 12 * Standards-Version: 4.3.0 -- Andreas Tille Fri, 11 Jan 2019 23:15:24 +0100 ncbi-vdb (2.9.2-1+dfsg-1) unstable; urgency=medium * New upstream version [ Steve Langasek ] * add missing implementation of uint64_msbit for i386 Closes: #907358 [ Andreas Tille ] * d/rules: - DEB_LDFLAGS_MAINT_APPEND := -Wl,--as-needed - Considered using DEB_LDFLAGS_MAINT_APPEND := -Wl,-z,defs which should prevent successful build of a broken library (thanks for the hint to Steve Langasek) Unfortunately this uncovers several other build failures - volunteers to provide the correct linker flags are welcome - dh_auto_build --no-parallel * Standards-Version: 4.2.1 -- Andreas Tille Tue, 04 Sep 2018 14:14:44 +0200 ncbi-vdb (2.9.1-1+dfsg-1) unstable; urgency=medium * New upstream version * Fixes accidental ABI break in 2.9.1 Closes: #902566 -- Andreas Tille Thu, 28 Jun 2018 05:41:16 +0200 ncbi-vdb (2.9.1+dfsg-1) unstable; urgency=medium * New upstream version * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 -- Andreas Tille Wed, 27 Jun 2018 21:41:56 +0200 ncbi-vdb (2.9.0-1+dfsg-2) unstable; urgency=medium * Drop some unneeded d-shlibs overrides available in version 0.82 * New library package libvdb-sqlite2 / libvdb-sqlite-dev featuring the sqlite interface -- Andreas Tille Sun, 01 Apr 2018 14:53:23 +0200 ncbi-vdb (2.9.0-1+dfsg-1) unstable; urgency=medium * New upstream version * Standards-Version: 4.1.3 * debhelper 11 * d/rules: s/DEB_BUILD_OPTIONS/DH_BUILD_MAINT_OPTIONS/ -- Andreas Tille Mon, 19 Mar 2018 11:36:13 +0100 ncbi-vdb (2.8.2-2+dfsg-1) unstable; urgency=medium * New upstream version * cme fix dpkg-control * Standards-Version: 4.1.1 * More adaptations to Debian packaged libmbedx * d/rules: Do not parse changelog * Try better hardening -- Andreas Tille Thu, 19 Oct 2017 23:40:15 +0200 ncbi-vdb (2.8.1+dfsg-2) unstable; urgency=medium * Fix install dir by using DEB_HOST_MULTIARCH instead of DEB_BUILD_GNU_TYPE (thanks for the patch to Graham Inggs ) Closes: #859260 -- Andreas Tille Sat, 01 Apr 2017 22:50:01 +0200 ncbi-vdb (2.8.1+dfsg-1) unstable; urgency=medium * New upstream version * Install libs/kfg/*.kfg into /usr/lib/ncbi-vdb/kfg/ -- Andreas Tille Wed, 11 Jan 2017 15:27:16 +0100 ncbi-vdb (2.8.0+dfsg-2) unstable; urgency=medium * Make sure libraries are properly linked with libmbed Closes: #844900 * Adjust dependencies from other development packages * debhelper 10 * d/watch: version=4 -- Andreas Tille Fri, 25 Nov 2016 12:41:49 +0100 ncbi-vdb (2.8.0+dfsg-1) unstable; urgency=medium * New upstream version * Use wildcard instead of $(CPU) in install to fix FTBFS on i386 (thanks for the patch to Logan Rosen ) Closes: #843129 * New Build-Depends: libmbedtls-dev -- Andreas Tille Fri, 04 Nov 2016 10:15:13 +0100 ncbi-vdb (2.7.0+dfsg-4) unstable; urgency=medium * Fix schema paths -- Andreas Tille Thu, 01 Sep 2016 11:49:14 +0200 ncbi-vdb (2.7.0+dfsg-3) unstable; urgency=medium * Fix build on i386 (Thanks to Aaron M. Ucko for the hint) -- Andreas Tille Thu, 01 Sep 2016 09:37:50 +0200 ncbi-vdb (2.7.0+dfsg-2) unstable; urgency=medium * Enable build on x32 by removing explicit -m32/-m64 Closes: #836129 * Add -msse2 to libs/search Closes: #836128 -- Andreas Tille Wed, 31 Aug 2016 08:36:36 +0200 ncbi-vdb (2.7.0+dfsg-1) unstable; urgency=medium * Initial release (Closes: #832165) -- Andreas Tille Mon, 25 Jul 2016 12:20:14 +0200