Source: pims
Section: python
Maintainer: Debian GIS Project <pkg-grass-devel@lists.alioth.debian.org>
Uploaders: Antonio Valentino <antonio.valentino@tiscali.it>
Build-Depends: debhelper-compat (= 13),
               dh-sequence-python3,
               python3-all,
               python3-av <!nocheck>,
               python3-jinja2 <!nocheck>,
               python3-imageio,
               python3-matplotlib <!nocheck>,
               python3-numpy,
               python3-packaging,
               python3-pil <!nocheck>,
               python3-pytest <!nocheck>,
               python3-setuptools,
               python3-slicerator,
               python3-tifffile,
               python3-versioneer
Standards-Version: 4.7.3
Testsuite: autopkgtest-pkg-pybuild
Homepage: https://github.com/soft-matter/pims
Vcs-Browser: https://salsa.debian.org/debian-gis-team/pims
Vcs-Git: https://salsa.debian.org/debian-gis-team/pims.git

Package: python3-pims
Architecture: all
Depends: ${python3:Depends},
         ${misc:Depends}
Recommends: python3-pil
Suggests: python3-matplotlib
Description: Python Image Sequence
 Scientific video can be packaged in various ways: familiar video
 formats like .AVI and .MOV, folders full of numbered images, or
 "stacks" of TIFF images. Each of these requires a separate Python
 module. And, once loaded, they have different methods for "accessing
 individual images, looping through the images in bulk, accessing a
 specific range, or dealing with multidimensional files".
 PIMS can do all of these using a consistent interface, handling the
 differences between different inputs invisibly.
 .
 Formats readable by pims include:
  * Directories or zipfiles of still images (most formats, including
    TIFF, JPEG, PNG, BMP), and TIFF stacks
  * Microscope images supported by the Bio-formats project, including
    Leica, Nikon, Olympus, and Zeiss formats. Requires separate
    installation; see below.
  * Movie formats and codecs supported by ffmpeg, including AVI,
    QuickTime MOV, and H.264 (MP4). May require separate installation.
  * CINE files from Vision Research cameras
  * SEQ files from NorPix StreamPix software
 .
 PIMS is based on readers by:
  * scikit-image
  * ffmpeg and PyAV (video formats such as AVI, MOV)
  * jpype (interface with Bio-formats)
  * Pillow (improved TIFF support)
  * tifffile (alternative TIFF support)
  * pims_nd2 (improved Nikon .nd2 support)
  * imageio (a multi-purpose reader package that reads and writes
    many formats)
  * moviepy (a Python module that supports video editing)
  * nd2reader (a Pure Python module for reading Nikon NIS Elements
    ND2 images and metadata)