Source: presto Section: python Priority: optional Maintainer: Debian Python Modules Team Uploaders: Steffen Moeller Build-Depends: debhelper (>= 11), dh-python, python3-all, python3-setuptools Standards-Version: 4.2.1 Homepage: https://presto.readthedocs.io Vcs-Browser: https://salsa.debian.org/python-team/modules/presto Vcs-Git: https://salsa.debian.org/python-team/modules/presto.git Testsuite: autopkgtest-pkg-python Package: python3-presto Architecture: all Depends: ${python3:Depends}, ${misc:Depends}, python3-numpy (>=1.8), python3-scipy (>=0.14), python3-pandas (>=0.15), python3-biopython (>=1.65) Description: toolkit for processing B and T cell sequences pRESTO is a toolkit for processing raw reads from high-throughput sequencing of B cell and T cell repertoires. . Dramatic improvements in high-throughput sequencing technologies now enable large-scale characterization of lymphocyte repertoires, defined as the collection of trans-membrane antigen-receptor proteins located on the surface of B cells and T cells. The REpertoire Sequencing TOolkit (pRESTO) is composed of a suite of utilities to handle all stages of sequence processing prior to germline segment assignment. pRESTO is designed to handle either single reads or paired-end reads. It includes features for quality control, primer masking, annotation of reads with sequence embedded barcodes, generation of unique molecular identifier (UMI) consensus sequences, assembly of paired-end reads and identification of duplicate sequences. Numerous options for sequence sorting, sampling and conversion operations are also included.