Source: presto
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>
Section: python
Testsuite: autopkgtest-pkg-python
Priority: optional
Build-Depends: debhelper-compat (= 13),
               dh-python,
               python3-all,
               python3-setuptools
Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/presto
Vcs-Git: https://salsa.debian.org/med-team/presto.git
Homepage: https://presto.readthedocs.io
Rules-Requires-Root: no

Package: python3-presto
Architecture: all
Depends: ${python3:Depends},
         ${misc:Depends},
         python3-numpy,
         python3-scipy,
         python3-pandas (>=0.15),
         python3-biopython (>=1.65)
Description: toolkit for processing B and T cell sequences (Python3 module)
 pRESTO is a toolkit for processing raw reads from high-throughput
 sequencing of B cell and T cell repertoires.
 .
 Dramatic improvements in high-throughput sequencing technologies now
 enable large-scale characterization of lymphocyte repertoires, defined
 as the collection of trans-membrane antigen-receptor proteins located on
 the surface of B cells and T cells. The REpertoire Sequencing TOolkit
 (pRESTO) is composed of a suite of utilities to handle all stages
 of sequence processing prior to germline segment assignment. pRESTO
 is designed to handle either single reads or paired-end reads. It
 includes features for quality control, primer masking, annotation of
 reads with sequence embedded barcodes, generation of unique molecular
 identifier (UMI) consensus sequences, assembly of paired-end reads and
 identification of duplicate sequences. Numerous options for sequence
 sorting, sampling and conversion operations are also included.
 .
 This package provides the presto Python3 module.

Package: presto
Architecture: all
Depends: ${python3:Depends},
         ${misc:Depends},
         python3-presto
Breaks: python3-presto (<= 0.6.0-1)
Replaces: python3-presto (<= 0.6.0-1)
Description: toolkit for processing B and T cell sequences
 pRESTO is a toolkit for processing raw reads from high-throughput
 sequencing of B cell and T cell repertoires.
 .
 Dramatic improvements in high-throughput sequencing technologies now
 enable large-scale characterization of lymphocyte repertoires, defined
 as the collection of trans-membrane antigen-receptor proteins located on
 the surface of B cells and T cells. The REpertoire Sequencing TOolkit
 (pRESTO) is composed of a suite of utilities to handle all stages
 of sequence processing prior to germline segment assignment. pRESTO
 is designed to handle either single reads or paired-end reads. It
 includes features for quality control, primer masking, annotation of
 reads with sequence embedded barcodes, generation of unique molecular
 identifier (UMI) consensus sequences, assembly of paired-end reads and
 identification of duplicate sequences. Numerous options for sequence
 sorting, sampling and conversion operations are also included.