Source: presto Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Section: python Testsuite: autopkgtest-pkg-python Priority: optional Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/presto Vcs-Git: https://salsa.debian.org/med-team/presto.git Homepage: https://presto.readthedocs.io Rules-Requires-Root: no Package: python3-presto Architecture: all Depends: ${python3:Depends}, ${misc:Depends}, python3-numpy, python3-scipy, python3-pandas (>=0.15), python3-biopython (>=1.65) Description: toolkit for processing B and T cell sequences (Python3 module) pRESTO is a toolkit for processing raw reads from high-throughput sequencing of B cell and T cell repertoires. . Dramatic improvements in high-throughput sequencing technologies now enable large-scale characterization of lymphocyte repertoires, defined as the collection of trans-membrane antigen-receptor proteins located on the surface of B cells and T cells. The REpertoire Sequencing TOolkit (pRESTO) is composed of a suite of utilities to handle all stages of sequence processing prior to germline segment assignment. pRESTO is designed to handle either single reads or paired-end reads. It includes features for quality control, primer masking, annotation of reads with sequence embedded barcodes, generation of unique molecular identifier (UMI) consensus sequences, assembly of paired-end reads and identification of duplicate sequences. Numerous options for sequence sorting, sampling and conversion operations are also included. . This package provides the presto Python3 module. Package: presto Architecture: all Depends: ${python3:Depends}, ${misc:Depends}, python3-presto Breaks: python3-presto (<= 0.6.0-1) Replaces: python3-presto (<= 0.6.0-1) Description: toolkit for processing B and T cell sequences pRESTO is a toolkit for processing raw reads from high-throughput sequencing of B cell and T cell repertoires. . Dramatic improvements in high-throughput sequencing technologies now enable large-scale characterization of lymphocyte repertoires, defined as the collection of trans-membrane antigen-receptor proteins located on the surface of B cells and T cells. The REpertoire Sequencing TOolkit (pRESTO) is composed of a suite of utilities to handle all stages of sequence processing prior to germline segment assignment. pRESTO is designed to handle either single reads or paired-end reads. It includes features for quality control, primer masking, annotation of reads with sequence embedded barcodes, generation of unique molecular identifier (UMI) consensus sequences, assembly of paired-end reads and identification of duplicate sequences. Numerous options for sequence sorting, sampling and conversion operations are also included.