primer3 (2.6.1-5) unstable; urgency=medium * Team upload. * Clean up source directory properly (Closes: #1045454) * Use execute_after hook over overrides in d/rules * Bump standards version to 4.7.0 (no changes needed) * Correct patch header metadata * Drop deprecated an-trap macro from manpage -- Ananthu C V Sun, 01 Dec 2024 17:24:55 +0530 primer3 (2.6.1-4) unstable; urgency=medium * Team upload. [ Lukas Märdian ] * d/t/run-unit-test: fix autopkgtest sed commands on s390x. (Closes: #1023823) -- Étienne Mollier Sun, 13 Nov 2022 11:49:48 +0100 primer3 (2.6.1-3) unstable; urgency=medium * Team upload. [ Steve Langasek ] * d/rules: fix handling of big-endian archs. (Closes: #1014626) [ Étienne Mollier ] * Standards-Version: 4.6.1 (routine-update) * d/primer3-examples.lintian-overrides: refresh override. * d/rules: remove executable bit to samples. * Add buildflags.patch: propagate Debian build flags. -- Étienne Mollier Sat, 09 Jul 2022 10:50:59 +0200 primer3 (2.6.1-2) unstable; urgency=medium * Run dh_auto_test with --no-parallel -- Andreas Tille Sat, 19 Feb 2022 17:57:05 +0100 primer3 (2.6.1-1) unstable; urgency=medium * New upstream version -- Andreas Tille Thu, 17 Feb 2022 15:38:18 +0100 primer3 (2.5.0-1) unstable; urgency=medium * Fix watchfile to detect new versions on github * New upstream version * Standards-Version: 4.6.0 (routine-update) * Apply multi-arch hints. + primer3-examples: Add Multi-Arch: foreign. * Fix PREFIX -- Andreas Tille Fri, 15 Oct 2021 15:20:35 +0200 primer3 (2.4.0-4) unstable; urgency=medium * Team upload * Fixup syntax skip for big endian platforms. -- Gianfranco Costamagna Thu, 02 Jul 2020 22:12:20 +0200 primer3 (2.4.0-3) unstable; urgency=medium [ Gianfranco Costamagna ] * Also skip autopkgtests that fail on big endian (see: 890993) Closes: #962190 [ Andreas Tille ] * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Secure URI in copyright format (routine-update) * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target (routine- update) * Remove trailing whitespace in debian/changelog (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Trim trailing whitespace. * debian/copyright: use spaces rather than tabs to start continuation lines. * Set fields Upstream-Name, Upstream-Contact in debian/copyright. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright). * Fix day-of-week for changelog entry 0.9-0.2. -- Andreas Tille Thu, 02 Jul 2020 08:10:35 +0200 primer3 (2.4.0-2) unstable; urgency=medium [ Liubov Chuprikova ] * Team upload. * Skip tests that fail on big endian Closes: #890993 * Added d/README.source with explanation why some tests are skipped * debian/patches/p3test_fix_exit_status.patch: Fix test to show correct exit status [ Andreas Tille ] * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 -- Liubov Chuprikova Mon, 28 May 2018 13:44:30 +0000 primer3 (2.4.0-1) unstable; urgency=medium * New upstream version * Secure URI in watch file * Standards-Version: 4.1.3 * debhelper 11 -- Andreas Tille Wed, 21 Feb 2018 09:21:42 +0100 primer3 (2.3.7-5) unstable; urgency=medium * d/upstream/metadata: - Added references to registries - yamllint cleanliness -- Steffen Moeller Thu, 14 Sep 2017 15:05:29 +0200 primer3 (2.3.7-4) unstable; urgency=medium * Fix build with gcc-7 Closes: #853621 * Standards-Version: 4.1.0 (no changes needed) * d/rules: use DEB_SOURCE * hardening=+all -- Andreas Tille Sat, 26 Aug 2017 06:55:03 +0200 primer3 (2.3.7-3) unstable; urgency=medium [ Andreas Tille ] * debhelper 10 * d/watch: version=4 [ Helmut Grohne ] * Fix FTCBFS: Pass CXX as CPP (Closes: #851230) -- Andreas Tille Fri, 13 Jan 2017 08:32:57 +0100 primer3 (2.3.7-2) unstable; urgency=medium * Team Upload [ Andreas Tille ] * Moved packaging from SVN to Git * cme fix dpkg-control * better hardening * split example data for test into separate arch all package * add lintian override for empty directories [ Canberk Koç ] * Autopkgtest added * debian/rules: - added dh_clean to override_dh_auto_test section - sed perl interpreter path -- Canberk Koç Mon, 27 Jun 2016 04:28:31 +0300 primer3 (2.3.7-1) unstable; urgency=medium * New upstream version * Moved debian/upstream to debian/upstream/metadata * cme fix dpkg-control -- Andreas Tille Thu, 10 Mar 2016 18:56:25 +0100 primer3 (2.3.6-1) unstable; urgency=low [ Charles Plessy ] * New upstream release. * Install configuration files in /etc (first step to fix bug 702693). * Normalised debian/control with config-model-edit. * Use canonical VCS URLs. [ Andreas Tille ] * Fix watch file * replace cdbs by dh * debian/patches/hardening.patch: Propagate hardening options * Standards-Version: 3.9.5 (no changes needed) * debian/patches/primer_thermodynamic_parameters_path_2_etc.patch: Make sure config files will be searched for in /etc/primer3_config/ instead of /opt/primer3_config/ Closes: #702693 * Verified that new upstream Closes: #716151, #716213 * New executable: ntthal (including manpage) * Removed *.xml variants of manpages to reduce redundancy -- Andreas Tille Thu, 19 Dec 2013 09:58:19 +0100 primer3 (2.3.5-1) unstable; urgency=low New upstream release. [ Andreas Tille ] * debian/upstream: - Remove duplicated entry for PMID - Added Volume, fixed Number - Added URL+eprint * debian/control: - Removed DM-Upload-Allowed - Standards-Version: 3.9.4 (no changes needed) * debhelper 9 (control+compat) * debian/copyright: PD License should be avoided - bumped packaging to same license as program itself -- Andreas Tille Tue, 05 Feb 2013 10:11:37 +0100 primer3 (2.3.2-1) unstable; urgency=low * New upstream release changing some default values. * Refreshed debian/copyright to machine-readable format version 1.0. Note that the license of Primer3 version 2.x changed to the GPLv2 or higher. * Spellchecked manual pages (Closes: #650477, thanks to A. Costa). * Using Debhelper 8 (debian/control, debian/compat). * Renamed debian/README.Debian debian/README.test as it is all about tests. * Conforms to Policy 3.9.3 (debian/control, no other changes needed). -- Charles Plessy Thu, 22 Mar 2012 13:35:35 +0900 primer3 (2.2.3-1) unstable; urgency=low * New upstream version * debian/primer3.docs: s/README.txt/primer3_manual.htm/ * debian/compat: 7 * debian/control: - Build-Depends: debhelper (>= 7) - Standards-Version: 3.9.1 (no changes needed * debian/source/format: 3.0 (quilt) * debian/README.source * debian/primer3.doc-base -- Andreas Tille Wed, 17 Nov 2010 14:01:59 +0100 primer3 (1.1.4-2) UNRELEASED; urgency=low [ David Paleino ] * Removed myself from Uploaders [ Charles Plessy ] * Documented informations in ‘debian/upstream-metadata.yaml’. * Removed mention of the bibliographic reference and the webservice in ‘debian/control’. -- David Paleino Sat, 23 May 2009 14:47:37 +0200 primer3 (1.1.4-1) unstable; urgency=low * New upstream release (No changes on Linux systems). * Updated my email address (debian/control, debian/copyright, manpages). * Updated the manpages: - using DocBook 4.5 - incremented Primer3 version to 1.1.4 -- Charles Plessy Fri, 09 May 2008 12:54:28 +0900 primer3 (1.1.3-1) unstable; urgency=low [ Charles Plessy ] * New upstream version: - 1.1.3: Corrected static buffer overflow errors in boulder_print_pairs() and boulder_print_oligos() in primer3_main.c. - 1.1.2: Updates to dpal.c so that no error forces an exit. Adpatation in primer3_main.c and ntdpal_main.c to updated error handling in dpal(). Arranged for primer3_main.c align() to check for and circumvent local alignments to "targets" < 3 nucleotides long, and added tests for this condition. Comment and code readability updates in dpal.h and dpal.c * Moved the Homepage: field out from the package's description. * debian/control: updated Steffen's email address. * debian/*.1.xml: corrected the headers of the sources of manpages. * debian/rules: converted to CDBS. [ David Paleino ] * debian/ntdpal.1, debian/primer3_core.1 and debian/oligotm.1 added - manpages are statically built now * debian/control: - B-D updated - added myself to Uploaders * Updated to Standards-Version 3.7.3 (no changes needed) -- Charles Plessy Mon, 25 Feb 2008 16:31:58 +0900 primer3 (1.1.1-1) unstable; urgency=low * New upstream release. * Enhances: emboss because EMBOSS has a wrapper for primer3_core. * Add Subversion repository URL to debian/control. * Updated the manpages -- Charles Plessy Sun, 3 Jun 2007 16:16:19 +0900 primer3 (1.1.0~beta-1) experimental; urgency=low * New upstream release. - Some part of primer3 is now licenced under the GNU GPL. - The oligtotm() function is now provided as a library, liboligotm. - The oligotm executable now takes additional arguments. - Non-backward compatible change: removed support of flag -2x_compat. * Added a watch file now that the sources are hosted on SourceForge.net. * Updated manpages. -- Charles Plessy Sun, 18 Feb 2007 09:04:16 +0900 primer3 (1.0b-1) unstable; urgency=low * Initial release. (Closes: #241235) * New upstream version released under a revised BSD licence. * Swiching to collaborative maintainance: Maintainer is a mailing-list, Uploaders are real people. * Using debhelper v5 and conforming to policy 3.7.2. * Relicencing the manpage of Primer3 (thanks to Steffen Moeller), adding one for ntdpal and oligotm. * Extensive tests during bulding, except on slow architectures. -- Charles Plessy Thu, 28 Sep 2006 20:18:54 +0900 primer3 (0.9-0.2) unstable; urgency=low * Contacted upstream author, change of section to non-free/optional. -- Steffen Moeller Thu, 01 Apr 2004 15:07:10 +0200 primer3 (0.9-0.1) unstable; urgency=low * Pre-Release. -- Steffen Moeller Wed, 31 Mar 2004 15:07:10 +0200