#!/usr/bin/make -f

export DEB_BUILD_MAINT_OPTIONS = hardening=+all

include /usr/share/dpkg/default.mk

sampledir:=$(CURDIR)/debian/$(DEB_SOURCE)-examples/usr/share/doc/$(DEB_SOURCE)/examples

BUILDARCH:=$(shell dpkg-architecture -q DEB_BUILD_ARCH_ENDIAN)

P3CORE_FAILED_TESTS:='primer_masker' \
	      'primer_masker_formatted'

FAILED_TESTS:=testmasker

%:
	dh $@ --sourcedirectory=src

override_dh_auto_build:
	dh_auto_build -- 'CPP=$$(CXX)'

override_dh_auto_install:
	dh_auto_install -- PREFIX=debian/$(DEB_SOURCE)/usr

override_dh_auto_test:
ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
ifneq ($(BUILDARCH),little)
	cp -a test/p3test.pl test/p3test.pl~
	cp -a test/Makefile test/Makefile~
	# exclude tests known to fail on big endian
	# See README.source for further explanation.
	for tst in $(P3CORE_FAILED_TESTS) ; do sed -i "/$${tst}.,/d" test/p3test.pl ; done
	for tst in $(FAILED_TESTS); do sed -i "/^test:/s/$$tst//" test/Makefile; done
endif
	dh_auto_test --no-parallel --sourcedirectory=test
ifneq ($(BUILDARCH),little)
	# restore original test file
	mv test/p3test.pl~ test/p3test.pl
	mv test/Makefile~ test/Makefile
endif
	dh clean --sourcedirectory=test
endif

override_dh_installexamples:
	dh_installexamples
	mkdir -p $(sampledir)/test;
	mkdir -p $(sampledir)/src;
	mkdir -p $(sampledir)/settings_files;
	mkdir -p $(sampledir)/kmer_lists;
	cp -aR ./test/* $(sampledir)/test;
	cp -aR ./src/humrep_and_simple.txt $(sampledir)/src;
	cp -a settings_files/primer*.txt $(sampledir)/settings_files;
	cp -aR ./kmer_lists/*.list $(sampledir)/kmer_lists;
	chmod -x $(sampledir)/test/thal*
	chmod -x $(sampledir)/test/amplicon3/amplicons.csv
	chmod -x $(sampledir)/test/primer_windows_newlines_input
	sed -i 's#/usr/local/bin/perl#/usr/bin/perl#' $(sampledir)/test/long_seq_tm_test.pl ;
	sed -i 's#/usr/local/bin/perl#/usr/bin/perl#' $(sampledir)/test/vgrep.pl ;