Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: PyMOL Source: https://sourceforge.net/projects/pymol/files/pymol/ Files-Excluded: */jquery.js Files: * Copyright: 1998-2016 Warren L. DeLano License: PyMOL The PyMOL source code is copyrighted, but you can freely use and copy it as long as you don't change or remove any of the copyright notices. . Permission to use, copy, modify, distribute, and distribute modified versions of this software and its documentation for any purpose and without fee is hereby granted, provided that the above copyright notice appear in all copies and that both the copyright notice and this permission notice appear in supporting documentation, and that the names of Warren L. DeLano or DeLano Scientific not be used in advertising or publicity pertaining to distribution of the software without specific, written prior permission. . WARREN LYFORD DELANO AND DELANO SCIENTIFIC DISCLAIM ALL WARRANTIES WITH REGARD TO THIS SOFTWARE, INCLUDING ALL IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS, IN NO EVENT SHALL WARREN LYFORD DELANO OR DELANO SCIENTIFIC BE LIABLE FOR ANY SPECIAL, INDIRECT OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THIS SOFTWARE. Comment: PyMOL Trademark Notice PyMOL(TM) is a trademark of DeLano Scientific. Derivate software which contains PyMOL source code must be plainly distinguished from the PyMOL package distributed by DeLano Scientific in all publicity, advertising, and documentation. . The slogans, "Includes PyMOL(TM).", "Based on PyMOL(TM) technology.", "Contains PyMOL(TM) source code.", and "Built using PyMOL(TM).", may be used in advertising, publicity, and documentation of derivate software provided that the notice, "PyMOL is a trademark of DeLano Scientific.", is included in a footnote or at the end of the document. . All other endorsements employing the PyMOL trademark require specific, written prior permission. . -- Warren L. DeLano (warren@delanoscientific.com) Files: contrib/uiuc/* Copyright: 2006 Theoretical and Computational Biophysics Group License: UIUC Comment: Note that this special instance of the VMD plugin tree source code has been automatically modified to work and compile within the PyMOL environment. Therefore, for all uses of this code other than compilation of PyMOL, we urge you to refer back to the Theoretical and Computational Biophysics Group at the University of Illinois at Urbana-Champaign (http://www.ks.uiuc.edu/) for pristine copies of the unmodified VMD plugin tree. Please do not rely upon our modified copy outside of the PyMOL context, since it may change unexpectedly. Files: contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx Copyright: 2009 D. E. Shaw Research, LLC License: BSD-3-clause Files: layer1/FontTTF.h Copyright: Fonts are (c) Bitstream. DejaVu changes are in public domain. Glyphs imported from Arev fonts are (c) Tavmjung Bah. License: Bitstream_Vera Bitstream Vera Fonts Copyright ------------------------------ . Copyright (c) 2003 by Bitstream, Inc. All Rights Reserved. Bitstream Vera is a trademark of Bitstream, Inc. . Permission is hereby granted, free of charge, to any person obtaining a copy of the fonts accompanying this license ("Fonts") and associated documentation files (the "Font Software"), to reproduce and distribute the Font Software, including without limitation the rights to use, copy, merge, publish, distribute, and/or sell copies of the Font Software, and to permit persons to whom the Font Software is furnished to do so, subject to the following conditions: . The above copyright and trademark notices and this permission notice shall be included in all copies of one or more of the Font Software typefaces. . The Font Software may be modified, altered, or added to, and in particular the designs of glyphs or characters in the Fonts may be modified and additional glyphs or characters may be added to the Fonts, only if the fonts are renamed to names not containing either the words "Bitstream" or the word "Vera". . This License becomes null and void to the extent applicable to Fonts or Font Software that has been modified and is distributed under the "Bitstream Vera" names. . The Font Software may be sold as part of a larger software package but no copy of one or more of the Font Software typefaces may be sold by itself. . THE FONT SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO ANY WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT OF COPYRIGHT, PATENT, TRADEMARK, OR OTHER RIGHT. IN NO EVENT SHALL BITSTREAM OR THE GNOME FOUNDATION BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, INCLUDING ANY GENERAL, SPECIAL, INDIRECT, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF THE USE OR INABILITY TO USE THE FONT SOFTWARE OR FROM OTHER DEALINGS IN THE FONT SOFTWARE. . Except as contained in this notice, the names of Gnome, the Gnome Foundation, and Bitstream Inc., shall not be used in advertising or otherwise to promote the sale, use or other dealings in this Font Software without prior written authorization from the Gnome Foundation or Bitstream Inc., respectively. For further information, contact: fonts at gnome dot org. . Arev Fonts Copyright ------------------------------ . Copyright (c) 2006 by Tavmjong Bah. All Rights Reserved. . Permission is hereby granted, free of charge, to any person obtaining a copy of the fonts accompanying this license ("Fonts") and associated documentation files (the "Font Software"), to reproduce and distribute the modifications to the Bitstream Vera Font Software, including without limitation the rights to use, copy, merge, publish, distribute, and/or sell copies of the Font Software, and to permit persons to whom the Font Software is furnished to do so, subject to the following conditions: . The above copyright and trademark notices and this permission notice shall be included in all copies of one or more of the Font Software typefaces. . The Font Software may be modified, altered, or added to, and in particular the designs of glyphs or characters in the Fonts may be modified and additional glyphs or characters may be added to the Fonts, only if the fonts are renamed to names not containing either the words "Tavmjong Bah" or the word "Arev". . This License becomes null and void to the extent applicable to Fonts or Font Software that has been modified and is distributed under the "Tavmjong Bah Arev" names. . The Font Software may be sold as part of a larger software package but no copy of one or more of the Font Software typefaces may be sold by itself. . THE FONT SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO ANY WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT OF COPYRIGHT, PATENT, TRADEMARK, OR OTHER RIGHT. IN NO EVENT SHALL TAVMJONG BAH BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, INCLUDING ANY GENERAL, SPECIAL, INDIRECT, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF THE USE OR INABILITY TO USE THE FONT SOFTWARE OR FROM OTHER DEALINGS IN THE FONT SOFTWARE. . Except as contained in this notice, the name of Tavmjong Bah shall not be used in advertising or otherwise to promote the sale, use or other dealings in this Font Software without prior written authorization from Tavmjong Bah. For further information, contact: tavmjong @ free . fr. Files: layer1/FontTTF2.h Copyright: 2003-2005, SIL International (http://scripts.sil.org/). License: OFL Files: layer1/FontGLUT8x13.cpp layer1/FontGLUT9x15.cpp layer1/FontGLUTHel12.cpp layer1/FontGLUTHel18.cpp Copyright: Mark J. Kilgard, 1994. License: freely_distributable This program is freely distributable without licensing fees and is provided without guarantee or warrantee expressed or implied. This program is -not- in the public domain. . Modifications by Warren L. DeLano, 2004. Files: modules/cealign/src/tnt/* Copyright: Mathematical and Computational Sciences Division National Institute of Technology, Gaithersburg, MD USA License: public_domain This software was developed at the National Institute of Standards and Technology (NIST) by employees of the Federal Government in the course of their official duties. Pursuant to title 17 Section 105 of the United States Code, this software is not subject to copyright protection and is in the public domain. NIST assumes no responsibility whatsoever for its use by other parties, and makes no guarantees, expressed or implied, about its quality, reliability, or any other characteristic. Files: ov/src/OVRandom.cpp Copyright: 1997 - 2002 Makoto Matsumoto , Takuji Nishimura License: BSD-3-clause Files: debian/* Copyright: 2002-2015 Michael Banck on License: GPL-2+ Files: debian/pymolRef.tex Copyright: 2007-2009 R. Bryn Fenwick License: GPL-2+ License: GPL-2+ This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . On Debian systems, the GNU General Public license version 2 can be found in the file `/usr/share/common-licenses/GPL-2'. License: BSD-3-clause Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: . * Redistributions of source code must retain the above copyright notice, this list of conditions, and the following disclaimer. * Redistributions in binary form must reproduce the above copyright notice, this list of conditions, and the following disclaimer in the documentation and/or other materials provided with the distribution. * The names of its contributors may not be used to endorse or promote products derived from this software without specific prior written permission. . THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. License: UIUC UIUC Open Source License . Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the Software), to deal with the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: . Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimers. . Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimers in the documentation and/or other materials provided with the distribution. . Neither the names of Theoretical and Computational Biophysics Group, University of Illinois at Urbana-Champaign, nor the names of its contributors may be used to endorse or promote products derived from this Software without specific prior written permission. . THE SOFTWARE IS PROVIDED AS IS, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS WITH THE SOFTWARE. License: OFL "Gentium" is a Reserved Font Name for this Font Software. "SIL" is a Reserved Font Name for this Font Software. . This Font Software is licensed under the SIL Open Font License, Version 1.0. No modification of the license is permitted, only verbatim copy is allowed. This license is copied below, and is also available with a FAQ at: http://scripts.sil.org/OFL . SIL OPEN FONT LICENSE Version 1.0 - 22 November 2005 . PREAMBLE The goals of the Open Font License (OFL) are to stimulate worldwide development of cooperative font projects, to support the font creation efforts of academic and linguistic communities, and to provide an open framework in which fonts may be shared and improved in partnership with others. . The OFL allows the licensed fonts to be used, studied, modified and redistributed freely as long as they are not sold by themselves. The fonts, including any derivative works, can be bundled, embedded, redistributed and sold with any software provided that the font names of derivative works are changed. The fonts and derivatives, however, cannot be released under any other type of license. . DEFINITIONS "Font Software" refers to any and all of the following: - font files - data files - source code - build scripts - documentation . "Reserved Font Name" refers to the Font Software name as seen by users and any other names as specified after the copyright statement. . "Standard Version" refers to the collection of Font Software components as distributed by the Copyright Holder. . "Modified Version" refers to any derivative font software made by adding to, deleting, or substituting -- in part or in whole -- any of the components of the Standard Version, by changing formats or by porting the Font Software to a new environment. . "Author" refers to any designer, engineer, programmer, technical writer or other person who contributed to the Font Software. . PERMISSION & CONDITIONS Permission is hereby granted, free of charge, to any person obtaining a copy of the Font Software, to use, study, copy, merge, embed, modify, redistribute, and sell modified and unmodified copies of the Font Software, subject to the following conditions: . 1) Neither the Font Software nor any of its individual components, in Standard or Modified Versions, may be sold by itself. . 2) Standard or Modified Versions of the Font Software may be bundled, redistributed and sold with any software, provided that each copy contains the above copyright notice and this license. These can be included either as stand-alone text files, human-readable headers or in the appropriate machine-readable metadata fields within text or binary files as long as those fields can be easily viewed by the user. . 3) No Modified Version of the Font Software may use the Reserved Font Name(s), in part or in whole, unless explicit written permission is granted by the Copyright Holder. This restriction applies to all references stored in the Font Software, such as the font menu name and other font description fields, which are used to differentiate the font from others. . 4) The name(s) of the Copyright Holder or the Author(s) of the Font Software shall not be used to promote, endorse or advertise any Modified Version, except to acknowledge the contribution(s) of the Copyright Holder and the Author(s) or with their explicit written permission. . 5) The Font Software, modified or unmodified, in part or in whole, must be distributed using this license, and may not be distributed under any other license. . TERMINATION This license becomes null and void if any of the above conditions are not met. . DISCLAIMER THE FONT SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO ANY WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT OF COPYRIGHT, PATENT, TRADEMARK, OR OTHER RIGHT. IN NO EVENT SHALL THE COPYRIGHT HOLDER BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, INCLUDING ANY GENERAL, SPECIAL, INDIRECT, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF THE USE OR INABILITY TO USE THE FONT SOFTWARE OR FROM OTHER DEALINGS IN THE FONT SOFTWARE.