python-biom-format (2.1.7+dfsg-2) unstable; urgency=medium
* Do not ship *.c and *.pyx cython input files in binary packages
* Fix "Could not import extension sphinx.ext.pngmath"
Closes: #922258
* Deactivate autopkgtest for the moment since it fails anyway
-- Andreas Tille <tille@debian.org> Wed, 13 Feb 2019 22:13:47 +0100
python-biom-format (2.1.7+dfsg-1) unstable; urgency=medium
* New upstream version
* debhelper 12
* Standards-Version: 4.3.0
* Provide data files for build-time test
* Fix permissions
* Secure URI in copyright format
* Remove trailing whitespace in debian/changelog
* rename debian/tests/control.autodep8 to debian/tests/control
-- Andreas Tille <tille@debian.org> Fri, 11 Jan 2019 23:50:29 +0100
python-biom-format (2.1.6+dfsg-2) unstable; urgency=medium
* Force LC_ALL=C.UTF-8 in build and autopkgtest
Closes: #896953, #901073
* Drop ancient X-Python-Version
-- Andreas Tille <tille@debian.org> Thu, 21 Jun 2018 05:31:25 +0200
python-biom-format (2.1.6+dfsg-1) unstable; urgency=medium
* New upstream version
* Fix build with sphinx 1.6
Closes: #896629
* cme fiy dpkg-control
- Standards-Version: 4.1.4
- Point Vcs-fields to Salsa
- Crop superfluous Breaks/Replaces
* debhelper 11
* Build-Depends:
- s/python-sphinx/python3-sphinx/
- Added: python-pandas
* Adapt doc-base files
* Move d/t/control to d/t/control.autodep8
* s/Testsuite: autopkgtest/Testsuite: autopkgtest-pkg-python/
-- Andreas Tille <tille@debian.org> Tue, 24 Apr 2018 18:27:20 +0200
python-biom-format (2.1.5+dfsg-7) unstable; urgency=medium
* d/copyright: Update Upstream-Contact
* Add another random seed to past tests relieably on all architectures
-- Andreas Tille <tille@debian.org> Thu, 12 Jan 2017 09:04:23 +0100
python-biom-format (2.1.5+dfsg-6) unstable; urgency=medium
* Add random seed to test that fails under some circumstances
Closes: #848410
* debhelper 10
* d/watch: version=4
-- Andreas Tille <tille@debian.org> Mon, 19 Dec 2016 22:29:00 +0100
python-biom-format (2.1.5+dfsg-5) unstable; urgency=medium
* Restrict set of architectures also for biom-format-tools to make sure
the package will not be built on architectures that are affected by
the h5py issue.
-- Andreas Tille <tille@debian.org> Wed, 12 Oct 2016 11:09:10 +0200
python-biom-format (2.1.5+dfsg-4) unstable; urgency=medium
* Restrict build to those architectures not affected by h5py issue
https://github.com/h5py/h5py/issues/428
This does not really close bug #820060 but we can lower its severity
at least to important.
-- Andreas Tille <tille@debian.org> Mon, 12 Sep 2016 09:01:34 +0200
python-biom-format (2.1.5+dfsg-3) unstable; urgency=medium
* Use sphinxdoc
Closes: #831239
* Use python-shinx in Build-Depends (instead only Build-Depends-Indep)
* cme fix dpkg-control
* hardening+=bindnow
-- Andreas Tille <tille@debian.org> Thu, 14 Jul 2016 14:04:56 +0200
python-biom-format (2.1.5+dfsg-2) unstable; urgency=medium
* Breaks+Replaces: python-biom-format (<= 2.1+dfsg-1)
Closes: #820028
* Enable building arch all packages separately
Closes: #820621
-- Andreas Tille <tille@debian.org> Sun, 10 Apr 2016 21:45:01 +0200
python-biom-format (2.1.5+dfsg-1) unstable; urgency=medium
[ Andreas Tille ]
* Removed pyqi as well as generation of bash_completion
* Build-Depends: python-click
[ Ghislain Antony Vaillant ]
* Properly run the upstream testsuite during the package build process
* Add packaging testsuite
* Provide documentation in separate arch-independent package
* d/rules: add call to dh_numpy
* let dh_python fill the binary package dependencies
* Provide command-line tools in separate package
* Provide the Python 3 package
-- Andreas Tille <tille@debian.org> Tue, 08 Mar 2016 15:38:30 +0100
python-biom-format (2.1.4+dfsg-2) unstable; urgency=medium
* Fix test target
Closes: #804441
* Fix clean target enabling building twice in a row
-- Andreas Tille <tille@debian.org> Tue, 10 Nov 2015 22:35:15 +0100
python-biom-format (2.1.4+dfsg-1) unstable; urgency=medium
* New upstream version
Closes: #802867
* Moved from SVN to Git
* cme fix dpkg-control
* Fix watch file
-- Andreas Tille <tille@debian.org> Tue, 27 Oct 2015 18:46:33 +0100
python-biom-format (2.1+dfsg-1) unstable; urgency=medium
* New upstream version
-- Andreas Tille <tille@debian.org> Tue, 12 Aug 2014 14:43:54 +0200
python-biom-format (2.0.0+dfsg-1) unstable; urgency=medium
* New upstream version (adpated Build-Depends and patches)
* switch to dh-python using buildsystem=pybuild
* New (versioned) Build-Depends
* Add ${shlibs:Depends} since package is now arch any
-- Andreas Tille <tille@debian.org> Tue, 20 May 2014 19:16:23 +0200
python-biom-format (1.3.1+dfsg-1) unstable; urgency=medium
[ Andreas Tille ]
* New upstream version (updated patches). New version also does not
use Cython
Closes: #742691
* Package is now Architecture: all
* Incorporate changes by BioLinux
* debian/patches/no-web-adds.patch: Save user privacy by preventing inclusion
of web adds
* Do not install scripts printing "This script no longer exists. ..."
any more
* Use manpage created by sphinx
-- Andreas Tille <tille@debian.org> Thu, 27 Mar 2014 11:52:15 +0100
python-biom-format (1.2.0-1biolinux1) precise; urgency=low
* Add runtime dep on PyQi
* Patch /usr/bin/biom script to force /usr/lib/python2.7/dist-packages
to the top of the PYTHONPATH
* Allow building with cython 0.15.1 on Ubuntu as it builds and passes all
the tests
* Drop deal_with_none_array_metadata for now as it fails the self tests
But it's still not right!
* Rename add_metadata to something less generic. It will die in the next
release anyway.
-- Tim Booth <tbooth@ceh.ac.uk> Fri, 28 Feb 2014 16:25:41 +0000
python-biom-format (1.2.0-1) unstable; urgency=low
* New upstream version
* debian/control:
- (Build-)Depends: pyqi
- Build-Depends: python-nose to enable auto_test
* debian/biom.1: Add simple manpage
* debian/rules:
- activate test using python-nose
- deactivate get-orig-source script and use plain uscan since
upstream tarball is clean now
-- Andreas Tille <tille@debian.org> Mon, 11 Nov 2013 09:24:46 +0100
python-biom-format (1.2.0-0biolinux2) precise; urgency=low
* New upstream.
* No need for the old cythonize tinkering in rules
* Add examples to /usr/share/doc
* Also add HTML API docs (single html build)
* Build manpages from Sphinx
* Add bash completion
* Investigate and patch issue converting BIOM to table with
taxonomy not set to an array
-- Tim Booth <tbooth@ceh.ac.uk> Wed, 25 Sep 2013 18:31:40 +0100
python-biom-format (1.1.2-1) unstable; urgency=low
* debian/watch:
- Enable '+dfsg' suffix in Debian versions
- Fix download location
- anonscm in Vcs fields
* debian/control:
- cme fix dpkg-control
* Remove workaround cython problem which was needed when 1.0.0 was
released because cython at this time was suffering from #682652
* debian/rules:
- use help2man to create manpages
-- Andreas Tille <tille@debian.org> Thu, 15 Aug 2013 01:17:43 +0200
python-biom-format (1.1.2-0ubuntu1) precise; urgency=low
* New upstream. Repack no longer needed.
-- Tim Booth <tbooth@ceh.ac.uk> Tue, 30 Apr 2013 18:09:17 +0100
python-biom-format (1.0.0+repack-1ubuntu1) precise; urgency=low
* Rebuild for Precise
* Minor changes to cleanup and get-orig-source that helped me
-- Tim Booth <tbooth@ceh.ac.uk> Fri, 10 Aug 2012 18:08:06 +0100
python-biom-format (1.0.0-1) unstable; urgency=low
* Initial release (Closes: #682242)
-- Andreas Tille <tille@debian.org> Fri, 03 Aug 2012 10:38:26 +0200