Source: python-dnachisel
Section: science
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>
Build-Depends:
 debhelper-compat (= 13),
 dh-sequence-python3,
 dh-sequence-sphinxdoc <!nodoc>,
 pybuild-plugin-pyproject,
 python3-all,
 python3-biopython,
 python3-docopt,
 python3-flametree,
 python3-numpy,
 python3-proglog,
 python3-pytest <!nocheck>,
 python3-python-codon-tables,
 python3-setuptools,
 python3-sphinx <!nodoc>,
Standards-Version: 4.7.4
Rules-Requires-Root: no
Homepage: https://github.com/Edinburgh-Genome-Foundry/DnaChisel
Vcs-Browser: https://salsa.debian.org/med-team/python-dnachisel
Vcs-Git: https://salsa.debian.org/med-team/python-dnachisel.git

Package: python3-dnachisel
Section: python
Architecture: all
Depends:
 ${python3:Depends},
 ${misc:Depends},
Suggests:
 bowtie,
 dnachisel,
 ncbi-blast+,
 python-dnachisel-doc,
 python3-dna-features-viewer,
 python3-geneblocks,
 python3-matplotlib,
 python3-pandas,
 python3-pdf-reports,
 python3-primer3,
 python3-sequenticon,
Description: optimize DNA sequences under constraints (Python 3)
 DNA Chisel optimizes DNA sequences subject to constraints and optimization
 objectives. Its sequence specifications can be combined to optimize codon
 usage, tune GC content, preserve translations, avoid unwanted patterns and
 homologies, and meet DNA synthesis requirements. Custom specifications can
 be defined in Python or applied through annotated GenBank records.
 .
 This package provides the Python 3 library. Report generation and some
 specifications require optional tools.

Package: dnachisel
Architecture: all
Depends:
 python3-dnachisel (= ${binary:Version}),
 ${python3:Depends},
 ${misc:Depends},
Suggests:
 python-dnachisel-doc,
Description: optimize DNA sequences under constraints (command-line tools)
 DNA Chisel optimizes DNA sequences subject to constraints and optimization
 objectives, including codon usage, GC content, translation preservation,
 and avoidance of unwanted sequence patterns and homologies.
 .
 This package provides the dnachisel command-line program, which reads
 constraints and optimization objectives from annotated GenBank records.

Package: python-dnachisel-doc
Section: doc
Architecture: all
Build-Profiles: <!nodoc>
X-Doc-Main-Package: python-dnachisel-doc
Depends:
 ${misc:Depends},
 ${sphinxdoc:Depends},
Description: optimize DNA sequences under constraints (documentation)
 DNA Chisel optimizes DNA sequences subject to constraints and optimization
 objectives, including codon usage, GC content, translation preservation,
 and avoidance of unwanted sequence patterns and homologies.
 .
 This package provides the HTML documentation and example scripts.