Source: python-freecontact Standards-Version: 4.7.4 Maintainer: Debian Med Packaging Team Uploaders: Laszlo Kajan , Andreas Tille , Alexandre Mestiashvili , Section: python Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 14), architecture-is-64-bit, dh-sequence-python3, libboost-python-dev, libfreecontact-dev, python3-dev, python3-setuptools, Vcs-Browser: https://salsa.debian.org/med-team/python-freecontact Vcs-Git: https://salsa.debian.org/med-team/python-freecontact.git Homepage: https://web.archive.org/web/20220129075614/https://rostlab.org/owiki/index.php/FreeContact Package: python3-freecontact Architecture: any Depends: ${misc:Depends}, ${python3:Depends}, ${shlibs:Depends}, Description: fast protein contact predictor - binding for Python3 FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011). . FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible. . A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input. . jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example. . This package contains the Python3 binding.