Source: python-freecontact
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Laszlo Kajan <lkajan@debian.org>,
           Andreas Tille <tille@debian.org>,
           Alexandre Mestiashvili <mestia@debian.org>
Section: python
Testsuite: autopkgtest-pkg-python
Priority: optional
Build-Depends: debhelper-compat (= 13),
               dh-python,
               libboost-python-dev,
               libfreecontact-dev,
               python3-all-dev
Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/python-freecontact
Vcs-Git: https://salsa.debian.org/med-team/python-freecontact.git
Homepage: https://rostlab.org/owiki/index.php/FreeContact
Rules-Requires-Root: no

Package: python3-freecontact
Architecture: any
Depends: ${misc:Depends},
         ${python3:Depends},
         ${shlibs:Depends}
Description: fast protein contact predictor - binding for Python3
 FreeContact is a protein residue contact predictor optimized for speed.
 Its input is a multiple sequence alignment. FreeContact can function as an
 accelerated drop-in for the published contact predictors
 EVfold-mfDCA of DS. Marks (2011) and
 PSICOV of D. Jones (2011).
 .
 FreeContact is accelerated by a combination of vector instructions, multiple
 threads, and faster implementation of key parts.
 Depending on the alignment, 8-fold or higher speedups are possible.
 .
 A sufficiently large alignment is required for meaningful results.
 As a minimum, an alignment with an effective (after-weighting) sequence count
 bigger than the length of the query sequence should be used. Alignments with
 tens of thousands of (effective) sequences are considered good input.
 .
 jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
 can be used to generate the alignments, for example.
 .
 This package contains the Python3 binding.