Source: python-oncoref
Section: science
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>
Build-Depends:
 debhelper-compat (= 13),
 dh-sequence-python3,
 pybuild-plugin-pyproject,
 python3-all,
 python3-setuptools (>= 77),
 python3-wheel,
Build-Depends-Indep:
 python3-adjusttext <!nocheck>,
 python3-filelock (>= 3.12) <!nocheck>,
 python3-matplotlib <!nocheck>,
 python3-matplotlib-venn (>= 1.0) <!nocheck>,
 python3-numpy <!nocheck>,
 python3-openpyxl (>= 3.1) <!nocheck>,
 python3-pandas <!nocheck>,
 python3-pyarrow <!nocheck>,
 python3-pytest <!nocheck>,
 python3-yaml <!nocheck>,
Testsuite: autopkgtest-pkg-pybuild
Standards-Version: 4.7.4
Rules-Requires-Root: no
Homepage: https://github.com/pirl-unc/oncoref
Vcs-Browser: https://salsa.debian.org/med-team/python-oncoref
Vcs-Git: https://salsa.debian.org/med-team/python-oncoref.git

Package: python3-oncoref
Architecture: all
Depends:
 ${python3:Depends},
 ${misc:Depends},
 python3-adjusttext,
 python3-filelock (>= 3.12),
 python3-matplotlib,
 python3-matplotlib-venn (>= 1.0),
 python3-numpy,
 python3-openpyxl (>= 3.1),
 python3-pandas,
 python3-pyarrow,
 python3-yaml,
Suggests:
 pyensembl,
 python3-pil,
 python3-pypdf (>= 5),
 python3-reportlab (>= 4),
 python3-xlrd (>= 2),
Description: curated cancer reference data and analysis tools (Python library)
 Oncoref provides a Python API for curated cancer
 reference data, including cancer-type ontologies, tumor mutational burden,
 incidence and mortality, checkpoint-inhibitor response, gene identifiers,
 and cancer-testis antigen evidence. It also provides reference plots and
 access to Human Protein Atlas and per-cohort expression datasets.
 .
 Small curated tables are included. Larger expression matrices and external
 reference datasets are downloaded and cached on demand. Genome integration
 requires the optional pyensembl package and an installed Ensembl release.
 .
 This package provides the Python library and bundled reference tables.

Package: oncoref
Architecture: all
Depends:
 ${python3:Depends},
 ${misc:Depends},
 python3-oncoref (= ${binary:Version}),
Description: command-line tools for curated cancer reference data
 Oncoref provides curated cancer reference data, including cancer-type
 ontologies, tumor mutational burden, incidence and mortality,
 checkpoint-inhibitor response, gene identifiers, and cancer-testis
 antigen evidence. It also provides reference plots and access to Human
 Protein Atlas and per-cohort expression datasets.
 .
 This package provides the oncoref command-line interface. Small curated
 tables are included in the accompanying Python library. Larger expression
 matrices and external reference datasets are downloaded and cached on demand.