Source: python-osteosarc
Section: science
Maintainer: Steffen Moeller <moeller@debian.org>
Build-Depends:
 debhelper-compat (= 13),
 dh-sequence-python3,
 pybuild-plugin-pyproject,
 python3-all,
 python3-bs4 (>= 4.12) <!nocheck>,
 python3-datacache (>= 1.12.0) <!nocheck>,
 python3-pysam (>= 0.22) <!nocheck>,
 python3-pytest (>= 8) <!nocheck>,
 python3-requests (>= 2.28) <!nocheck>,
 python3-setuptools (>= 77),
 samtools <!nocheck>,
Standards-Version: 4.7.4
Homepage: https://github.com/iskandr/osteosarc
Vcs-Browser: https://salsa.debian.org/med-team/python-osteosarc
Vcs-Git: https://salsa.debian.org/med-team/python-osteosarc.git

Package: python3-osteosarc
Architecture: all
Depends:
 python3-bs4 (>= 4.12),
 python3-datacache (>= 1.12.0),
 python3-pysam (>= 0.22),
 python3-requests (>= 2.28),
 ${python3:Depends},
 ${misc:Depends},
Recommends: samtools
Suggests: osteosarc
Description: access to the public osteosarcoma dataset
 Osteosarc provides a Python library and command-line tool for exploring
 the public osteosarc.com dataset, which contains sequencing data, variant
 calls, cancer vaccine targets and clinical history from one patient's
 osteosarcoma treatment.
 .
 It can browse samples and sequencing files, select variants and vaccine
 peptides, chart clinical events, and extract small indexed BAM files from
 remote alignments. Metadata snapshots, checksums and acquisition records
 support reproducible access and offline reuse of cached data.
 .
 This package includes the Python 3 library and documentation. The
 command-line tool is provided by the osteosarc package. Read extraction
 requires SAMtools.

Package: osteosarc
Architecture: all
Depends:
 python3-osteosarc (= ${binary:Version}),
 ${python3:Depends},
 ${misc:Depends},
Recommends: samtools
Description: command-line access to the public osteosarcoma dataset
 Osteosarc explores the public osteosarc.com dataset, which contains
 sequencing data, variant calls, cancer vaccine targets and clinical
 history from one patient's osteosarcoma treatment.
 .
 The osteosarc command can browse samples and sequencing files, select
 variants and vaccine peptides, chart clinical events, and extract small
 indexed BAM files from remote alignments. Metadata snapshots and cached
 downloads support reproducible access and offline reuse.
 .
 This package includes the command-line tool and its manual page. Read
 extraction requires SAMtools.