#!/usr/bin/make -f

include /usr/share/dpkg/default.mk

export PYBUILD_NAME=pysam
export LC_ALL = C.UTF-8

export DEB_BUILD_MAINT_OPTIONS = hardening=+all
export DEB_LDFLAGS_MAINT_APPEND=-Wl,--as-needed

TESTPKG    := $(DEB_SOURCE)-tests

export HTSLIB_MODE=external
HTSLIBDIR  := /usr/lib/$(DEB_HOST_MULTIARCH)
export HTSLIB_LIBRARY_DIR=$(HTSLIBDIR)
export HTSLIB_INCLUDE_DIR=/usr/include

# unfortunately this does not work - any hint to fix this would be really welcome
#export PYBUILD_TEST_ARGS_python3=-k-XTestRemoteFileHTTP -k-XTestRemoteFileHTTPWithHeader

clean: clean-tests
%:
	dh $@ --with python3 --buildsystem=pybuild

override_dh_install: clean-tests
	dh_install -Xtest.gtf.gz
	find debian -name log.txt -delete

ifeq (,$(findstring nocheck, $(DEB_BUILD_OPTIONS)))
override_dh_auto_test: pysam_data.all cbcf_data.all
	export PYBUILD_TEST_ARGS='|| true' ; dh_auto_test
else
override_dh_auto_test:
endif

override_dh_auto_clean:
	dh_auto_clean
	$(RM) \
		pysam/config.py \
		pysam/config.h \
		pysam/lib*.c \
		samtools/config.h \
		bcftools/config.h
	rm -rf pysam.egg-info

.PHONY: pysam_data.% cbcf_data.%
cbcf_data.%:
	cd tests/$(basename $@) && $(MAKE) $*
pysam_data.%:
	cd tests/$(basename $@) && $(MAKE) $*

.PHONY: clean-tests
clean-tests: pysam_data.clean cbcf_data.clean
	find . -name "*.pyc" -delete
	find . -name "*.pyxbldc" -delete
	find . -name "tmp_*.bam" -delete
	find . -name "*.bai*" -delete
	find . -name "*.cram*" -delete
	find . -name "pysam_uncompressed.bam" -delete
	rm -rf	tests/pysam_test_work \
		tests/example_htslib.gtf.gz.tbi \
		tests/log.txt \
		tests/test.bam \
		tests/_compile_test.c \
		tests/pysam_ex2.sam \
		tests/__pycache__ \
		pysam/calignmentfile.c \
		pysam/cbcf.c \
		tests/GRCh38_full_analysis_set_plus_decoy_hla.fa.fai \
		tests/pysam_data/ex1.fa.gz \
		tests/pysam_data/ex1.fa.gz.gzi \
		tests/pysam_data/ex1_csi.bam.csi
	rm -rf .pytest_cache/