Source: python-pyvcf Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Section: python Testsuite: autopkgtest-pkg-python Priority: optional Build-Depends: debhelper-compat (= 13), dh-python, cython3, python3-all-dev, python3-setuptools, python3-pytest , python3-pysam , Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/python-pyvcf Vcs-Git: https://salsa.debian.org/med-team/python-pyvcf.git Homepage: https://github.com/jamescasbon/PyVCF Rules-Requires-Root: no Package: python3-vcf Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends}, ${python3:Depends}, python3-pysam Breaks: python3-pyvcf Provides: python3-pyvcf Replaces: python3-pyvcf Description: Variant Call Format (VCF) parser for Python 3 The Variant Call Format (VCF) specifies the format of a text file used in bioinformatics for storing gene sequence variations. The format has been developed with the advent of large-scale genotyping and DNA sequencing projects, such as the 1000 Genomes Project. . The intent of this module is to mimic the ``csv`` module in the Python stdlib, as opposed to more flexible serialization formats like JSON or YAML. ``vcf`` will attempt to parse the content of each record based on the data types specified in the meta-information lines -- specifically the ##INFO and ##FORMAT lines. If these lines are missing or incomplete, it will check against the reserved types mentioned in the spec. Failing that, it will just return strings. . This package provides the Python 3 modules. Package: pyvcf Architecture: all Depends: ${misc:Depends}, ${python3:Depends}, python3-vcf Description: helper scripts for Variant Call Format (VCF) parser The Variant Call Format (VCF) specifies the format of a text file used in bioinformatics for storing gene sequence variations. The format has been developed with the advent of large-scale genotyping and DNA sequencing projects, such as the 1000 Genomes Project. . The intent of this module is to mimic the ``csv`` module in the Python stdlib, as opposed to more flexible serialization formats like JSON or YAML. ``vcf`` will attempt to parse the content of each record based on the data types specified in the meta-information lines -- specifically the ##INFO and ##FORMAT lines. If these lines are missing or incomplete, it will check against the reserved types mentioned in the spec. Failing that, it will just return strings. . This package provides helper scripts using python3-pyvcf. Package: python-pyvcf-examples Architecture: all Depends: ${misc:Depends} Suggests: python3-pyvcf Multi-Arch: foreign Description: Example data for Variant Call Format (VCF) parser for Python The Variant Call Format (VCF) specifies the format of a text file used in bioinformatics for storing gene sequence variations. The format has been developed with the advent of large-scale genotyping and DNA sequencing projects, such as the 1000 Genomes Project. . The intent of this module is to mimic the ``csv`` module in the Python stdlib, as opposed to more flexible serialization formats like JSON or YAML. ``vcf`` will attempt to parse the content of each record based on the data types specified in the meta-information lines -- specifically the ##INFO and ##FORMAT lines. If these lines are missing or incomplete, it will check against the reserved types mentioned in the spec. Failing that, it will just return strings. . This package provides example data to test the Python modules.