Source: r-bioc-genomicalignments
Standards-Version: 4.7.3
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders:
 Andreas Tille <tille@debian.org>,
 Charles Plessy <plessy@debian.org>,
Section: gnu-r
Testsuite: autopkgtest-pkg-r
Build-Depends:
 debhelper-compat (= 13),
 dh-r,
 r-base-dev,
 r-bioc-biocgenerics,
 r-bioc-s4vectors,
 r-bioc-iranges,
 r-bioc-genomeinfodb,
 r-bioc-genomicranges (>= 1.55.3),
 r-bioc-summarizedexperiment,
 r-bioc-biostrings,
 r-bioc-rsamtools,
 r-bioc-biocparallel,
 architecture-is-64-bit,
 architecture-is-little-endian,
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-genomicalignments
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-genomicalignments.git
Homepage: https://bioconductor.org/packages/GenomicAlignments/
Rules-Requires-Root: no

Package: r-bioc-genomicalignments
Architecture: any
Depends:
 ${R:Depends},
 ${shlibs:Depends},
 ${misc:Depends},
Recommends:
 ${R:Recommends},
Suggests:
 ${R:Suggests},
Description: BioConductor representation and manipulation of short genomic alignments
 This BioConductor package provides efficient containers for storing and
 manipulating short genomic alignments (typically obtained by aligning
 short reads to a reference genome). This includes read counting,
 computing the coverage, junction detection, and working with the
 nucleotide content of the alignments.