Source: r-bioc-genomicalignments
Standards-Version: 4.7.4
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders:
 Andreas Tille <tille@debian.org>,
 Charles Plessy <plessy@debian.org>,
Section: gnu-r
Testsuite: autopkgtest-pkg-r
Build-Depends:
 debhelper-compat (= 14),
 dh-r,
 r-base-dev,
 r-bioc-biocgenerics,
 r-bioc-s4vectors (>= 0.47.6),
 r-bioc-iranges,
 r-bioc-seqinfo,
 r-bioc-genomicranges (>= 1.61.1),
 r-bioc-summarizedexperiment (>= 1.39.1),
 r-bioc-biostrings (>= 2.77.2),
 r-bioc-rsamtools (>= 2.25.1),
 r-bioc-biocparallel,
 r-bioc-cigarillo,
 r-pkg-team-core-architecture,
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-genomicalignments
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-genomicalignments.git
Homepage: https://bioconductor.org/packages/GenomicAlignments/

Package: r-bioc-genomicalignments
Architecture: any
Depends:
 ${R:Depends},
 ${shlibs:Depends},
 ${misc:Depends},
 r-pkg-team-core-architecture,
Recommends:
 ${R:Recommends},
Suggests:
 ${R:Suggests},
Description: Representation and manipulation of short genomic alignments
 Provides efficient containers for storing and manipulating short genomic
 alignments (typically obtained by aligning short reads to a reference genome).
 This includes read counting, computing the coverage, junction detection,
 and working with the nucleotide content of the alignments.