Source: r-bioc-genomicfeatures Maintainer: Debian R Packages Maintainers Uploaders: Andreas Tille Section: gnu-r Testsuite: autopkgtest-pkg-r Priority: optional Build-Depends: debhelper (>= 12~), dh-r, r-base-dev, r-bioc-biocgenerics, r-bioc-s4vectors (>= 0.17.29), r-bioc-iranges (>= 2.13.23), r-bioc-genomeinfodb (>= 1.15.4), r-bioc-genomicranges (>= 1.31.17), r-bioc-annotationdbi (>= 1.41.4), r-cran-dbi, r-cran-rsqlite (>= 2.0), r-cran-rcurl, r-bioc-xvector (>= 0.19.7), r-bioc-biostrings (>= 2.47.6), r-bioc-rtracklayer (>= 1.39.7), r-bioc-biomart, r-bioc-biobase (>= 2.15.1) Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-genomicfeatures Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-genomicfeatures.git Homepage: https://bioconductor.org/packages/GenomicFeatures/ Package: r-bioc-genomicfeatures Architecture: all Depends: ${R:Depends}, ${misc:Depends} Recommends: ${R:Recommends} Suggests: ${R:Suggests} Description: GNU R tools for making and manipulating transcript centric annotations A set of tools and methods for making and manipulating transcript centric annotations. With these tools the user can easily download the genomic locations of the transcripts, exons and cds of a given organism, from either the UCSC Genome Browser or a BioMart database (more sources will be supported in the future). This information is then stored in a local database that keeps track of the relationship between transcripts, exons, cds and genes. Flexible methods are provided for extracting the desired features in a convenient format.