Source: r-bioc-isoformswitchanalyzer
Standards-Version: 4.7.3
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders:
 Steffen Moeller <moeller@debian.org>,
Section: gnu-r
Testsuite: autopkgtest-pkg-r
Build-Depends:
 debhelper-compat (= 13),
 dh-r,
 r-base-dev,
 r-bioc-limma,
 r-bioc-dexseq,
 r-bioc-saturn,
 r-bioc-sva,
 r-cran-ggplot2,
 r-bioc-pfamanalyzer,
 r-bioc-bsgenome,
 r-cran-plyr,
 r-cran-reshape2,
 r-cran-gridextra,
 r-bioc-biostrings,
 r-bioc-iranges,
 r-bioc-genomicranges,
 r-cran-rcolorbrewer,
 r-bioc-rtracklayer,
 r-cran-venndiagram,
 r-cran-dbi,
 r-bioc-genomeinfodb,
 r-bioc-tximport,
 r-bioc-tximeta,
 r-bioc-edger,
 r-cran-futile.logger,
 r-cran-stringr,
 r-cran-dplyr,
 r-cran-magrittr,
 r-cran-readr,
 r-cran-tibble,
 r-bioc-xvector,
 r-bioc-biocgenerics,
 r-cran-rcurl,
 r-bioc-biobase,
 r-bioc-summarizedexperiment,
 r-cran-tidyr,
 r-bioc-s4vectors,
 r-bioc-biocparallel,
 r-bioc-pwalign,
 architecture-is-64-bit,
 architecture-is-little-endian,
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-isoformswitchanalyzer
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-isoformswitchanalyzer.git
Homepage: https://bioconductor.org/packages/IsoformSwitchAnalyzeR/
Rules-Requires-Root: no

Package: r-bioc-isoformswitchanalyzer
Architecture: any
Depends:
 ${R:Depends},
 ${shlibs:Depends},
 ${misc:Depends},
Recommends:
 ${R:Recommends},
Suggests:
 ${R:Suggests},
Description: Identify, Annotate and Visualize Alternative Splicing and
 Isoform Switches with Functional Consequences from both short- and
 long-read RNA-seq data. Analysis of alternative splicing and
 isoform switches with predicted functional consequences (e.g.
 gain/loss of protein domains etc.) from quantification of all
 types of RNASeq by tools such as Kallisto, Salmon, StringTie,
 Cufflinks/Cuffdiff etc.