Source: r-bioc-netsam
Standards-Version: 4.7.4
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders:
 Steffen Moeller <moeller@debian.org>,
Section: gnu-r
Testsuite: autopkgtest-pkg-r
Build-Depends:
 debhelper-compat (= 14),
 dh-r,
 r-base-dev,
 r-cran-seriation,
 r-cran-igraph (>= 2.0.0),
 r-cran-wgcna,
 r-bioc-biomart,
 r-bioc-annotationdbi,
 r-cran-doparallel,
 r-cran-foreach,
 r-cran-survival,
 r-bioc-go.db,
 r-cran-r2html,
 r-cran-dbi,
 r-pkg-team-core-architecture,
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-netsam
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-netsam.git
Homepage: https://bioconductor.org/packages/NetSAM/

Package: r-bioc-netsam
Architecture: all
Depends:
 ${R:Depends},
 ${misc:Depends},
 r-pkg-team-core-architecture,
Recommends:
 ${R:Recommends},
Suggests:
 ${R:Suggests},
Description: Network Seriation And Modularization
 Current high-throughput analyses for gene expression data
 commonly yield a genome-wide overview on genes affected
 by a disturbance (genetic mutation, drug, ...) to a tissue
 sample or cell culture. But not all individuals correspond
 equally - because of differences in the effect of the
 disturbance or yet unknown gentic cofactors. The genes
 always changed may be closer to the cause of the disturbance.
 Those correlating a bit less with the disturbance may
 correlate well with another gene, and thus may constitue
 a pathway carrying the phenotype or the biological reaction
 to it.
 .
 The NetSAM (Network Seriation and Modularization) package
 takes an edge-list representation of a network as an input,
 performs network seriation and modularization analysis, and
 generates as files that can be used as an input for the
 one-dimensional network visualization tool NetGestalt
 (http://www.netgestalt.org) or other network analysis.