Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: rtracklayer Upstream-Contact: Michael Lawrence Source: https://bioconductor.org/packages/rtracklayer/ Files: * Copyright: © 2006-2016 Michael Lawrence, Vince Carey, Robert Gentleman License: Artistic-2.0 Files: src/ucsc/* Copyright: 2011-2014 The Regents of the University of California License: all_use_kentlib *** TEXT FROM ORIGINAL KENT SOURCE LIB README *** This directory contains general purpose, web oriented, and computational biology oriented modules, as well as some less general stuff associated with the Intronerator web site. Initially this library was created by Jim Kent from 1999 to 2001. Since then other programmers have also added to it. Jim continues to make substantial contributions. . With the exception of the gifcomp.c module, all modules here are free for all use - public, private, or commercial. The gifcomp.c module contains code originally distributed by CompuServe under a similar "free for all" license. However this uses the LZW patented by UniSys, which UniSys started enforcing several years after CompuServe released this module. The last I heard UniSys did not require a license for non-commercial purposes, but did require a license for commercial purposes. This may change in the future, though the patent is nearing it's expiration date in any case. Commercial users are advised to either get a license for LZW, or to switch from GIF to PNG. Files: src/ucsc/bits.* src/ucsc/common.* src/ucsc/dlist.* src/ucsc/dnaseq.* src/ucsc/dnautil.* src/ucsc/dystring.* src/ucsc/errAbort.* src/ucsc/hash.* src/ucsc/hmmstats.c src/ucsc/htmshell.h src/ucsc/linefile.* src/ucsc/localmem.* src/ucsc/memalloc.* src/ucsc/net.* src/ucsc/obscure.* src/ucsc/options.h src/ucsc/os*x.c src/ucsc/portable.h src/ucsc/sqlNum.* src/ucsc/wildcmp.c src/ucsc/cheapcgi.h src/ucsc/hmmstats.h src/ucsc/portimpl.h src/ucsc/sig.h Copyright: 2000-2005 Jim Kent License: all_use license is hereby granted for all use - public, private or commercial Comment: The files src/ucsc/cheapcgi.h src/ucsc/hmmstats.h src/ucsc/portimpl.h src/ucsc/sig.h in this source download do contain the statement: Source code may be freely used for personal, academic, and non-profit purposes. Commercial use permitted only by explicit agreement with Jim Kent (jim_kent@pacbell.net) but the author Jim Kent declared publicly here https://lists.alioth.debian.org/pipermail/debian-med-packaging/2016-May/042035.html that this is not the proper license but the license above applies. Files: debian/* Copyright: 2013-2016 Andreas Tille License: Artistic-2.0 License: Artistic-2.0 The "Artistic License" . Preamble . 1. You may make and give away verbatim copies of the source form of the Standard Version of this Package without restriction, provided that you duplicate all of the original copyright notices and associated disclaimers. . 2. You may apply bug fixes, portability fixes and other modifications derived from the Public Domain or from the Copyright Holder. A Package modified in such a way shall still be considered the Standard Version. . 3. 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