rna-star (2.7.11b+dfsg-2) unstable; urgency=medium * Team upload. * d/control: simplify Aritechture selection via the provisions from the architecture-properties package. * d/rules: fix typo that was affecting the reprotest when the shell was set to Bash. * d/rules: fix dh_auto_clean. -- Michael R. Crusoe Fri, 25 Oct 2024 16:34:57 +0200 rna-star (2.7.11b+dfsg-1) unstable; urgency=medium * Team upload. * New upstream version * d/rules: Remove override_dh_auto_clean * d/clean: Remove generated files (Closes: #1045634) * d/patches: Add patch to fix typos -- Lance Lin Fri, 09 Feb 2024 23:04:19 +0700 rna-star (2.7.11a+dfsg-1) unstable; urgency=medium [ sangmeng ] * debian/control: add loong64 support [ Andreas Tille ] * New upstream version -- Andreas Tille Mon, 21 Aug 2023 19:46:04 +0200 rna-star (2.7.10b+dfsg-2) unstable; urgency=medium * Team upload. * debian/patches/packaged_simde: Use packaged SIMDe header, not the code-copy. * Standards-Version: 4.6.2 (routine-update) -- Michael R. Crusoe Sun, 22 Jan 2023 15:33:29 +0100 rna-star (2.7.10b+dfsg-1) unstable; urgency=medium * New upstream release. -- Sascha Steinbiss Tue, 27 Dec 2022 02:18:32 +0100 rna-star (2.7.10a+dfsg-4) unstable; urgency=medium * Fix watch file * Standards-Version: 4.6.1 (routine-update) -- Andreas Tille Wed, 12 Oct 2022 07:41:46 +0200 rna-star (2.7.10a+dfsg-3) unstable; urgency=medium * Add patch to fix gcc-12 FTBFS (Closes: #1013030) -- Nilesh Patra Fri, 24 Jun 2022 19:46:55 +0000 rna-star (2.7.10a+dfsg-2) unstable; urgency=medium * Team upload. [ Lance Lin ] * Remove build-depends on vim-common (Closes: #1007987) [ Andreas Tille ] * Fix watchfile to detect new versions on github * Standards-Version: 4.6.0 (routine-update) * DEP3 -- Lance Lin Wed, 6 Apr 2022 19:19:25 +0700 rna-star (2.7.10a+dfsg-1) unstable; urgency=medium * New upstream version 2.7.10a+dfsg * Refresh patches * Skip seeking GIT_BRANCH_COMMIT_DIFF -- Nilesh Patra Sun, 16 Jan 2022 22:05:44 +0530 rna-star (2.7.9a+dfsg-3) unstable; urgency=medium * d/salsa-ci.yml: Reprotest is enabled, disable blhc and i386 build * Clean pre-each build so as to build all files for each SIMD level -- Nilesh Patra Wed, 18 Aug 2021 15:43:45 +0530 rna-star (2.7.9a+dfsg-2) unstable; urgency=medium * d/p/do-not-enforce-avx2.patch: Remove usage of -mavx2 by default (Closes: #992270) * d/salsa-ci.yml: Disable reprotest and build on i386 -- Nilesh Patra Wed, 18 Aug 2021 12:20:57 +0530 rna-star (2.7.9a+dfsg-1) unstable; urgency=medium [ Steffen Möller ] * Update metadata - added ref to guix [ Nilesh Patra ] * d/watch: Fix watch regex * New upstream version 2.7.9a+dfsg * Refresh d/p/donotuse_own_htslib.patch * Refresh d/p/reproducible.patch * Drop d/p/simde.patch: Merged upstream * d/salsa-ci.yml: Do not build salsa CI on i386, do not run blhc -- Nilesh Patra Sun, 15 Aug 2021 23:18:21 +0530 rna-star (2.7.8a+dfsg-2) unstable; urgency=high * Team upload. [ Nilesh Patra ] * debian/{rules,control,patches/simde.patch}: use libsimde-dev to enable building on non-x86 systems. Removed "-march=native" architecture baseline violation. Closes: #983723 [ Michael R. Crusoe ] * debian/{rules,clean: specify the source directory, and simplify * debian/patches/reproducible.patch: Reproducibly include the build time using SOURCE_DATE_EPOCH. Also forwarded upstream * On amd64: build STAR for each SIMD level from AVX2 on down. * Build and ship STARlong as well -- Michael R. Crusoe Mon, 01 Mar 2021 20:14:32 +0100 rna-star (2.7.8a+dfsg-1) unstable; urgency=medium * New upstream version * Upstream did not remove opal/opal.o after build - extended cleaning -- Steffen Moeller Tue, 23 Feb 2021 19:15:39 +0100 rna-star (2.7.7a+dfsg-1) unstable; urgency=medium * New upstream version * Standards-Version: 4.5.1 (routine-update) * Switch watch version to 4 -- Nilesh Patra Wed, 06 Jan 2021 16:28:02 +0530 rna-star (2.7.6a+dfsg-1) unstable; urgency=medium * New upstream version -- Andreas Tille Fri, 02 Oct 2020 14:49:32 +0200 rna-star (2.7.5c+dfsg-3) unstable; urgency=medium * Source upload to enable testing migration. * Confirmed autopkgtest fixed. Closes: #970340 -- Sascha Steinbiss Wed, 16 Sep 2020 08:56:26 +0200 rna-star (2.7.5c+dfsg-2) unstable; urgency=medium * Fix autopkgtest by allowing output to stderr. -- Sascha Steinbiss Tue, 15 Sep 2020 15:45:46 +0200 rna-star (2.7.5c+dfsg-1) unstable; urgency=medium * New upstream version -- Steffen Moeller Fri, 21 Aug 2020 21:47:38 +0200 rna-star (2.7.5a+20200629git1552aa0-1) unstable; urgency=medium * Upstream kindly fixed the FTBFS reported before -- Steffen Moeller Tue, 07 Jul 2020 19:09:25 +0200 rna-star (2.7.5a+dfsg-1) UNRELEASED; urgency=medium * New upstream version * TODO: FTBFS - informed upstream on - https://github.com/alexdobin/STAR/pull/956 - https://github.com/alexdobin/STAR/issues/957 -- Steffen Moeller Sat, 27 Jun 2020 17:10:17 +0200 rna-star (2.7.4a+dfsg-1) unstable; urgency=medium * New upstream version * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. -- Steffen Moeller Sat, 06 Jun 2020 20:31:10 +0200 rna-star (2.7.3a+dfsg-2) unstable; urgency=medium * Team upload. * debhelper-compat 12 * Otherwise no change build to pick up libhts3 -- Michael R. Crusoe Tue, 17 Dec 2019 16:01:10 +0100 rna-star (2.7.3a+dfsg-1) unstable; urgency=medium * New upstream version. * Bump Standards-Version. * Use debhelper 12. -- Sascha Steinbiss Thu, 10 Oct 2019 00:26:31 +0200 rna-star (2.7.2b+dfsg-1) unstable; urgency=medium * New upstream version. -- Steffen Moeller Thu, 26 Sep 2019 18:51:51 +0200 rna-star (2.7.1a+dfsg-2) unstable; urgency=medium [ Helmut Grohne ] * Fix FTCBFS: Let dh_auto_build pass cross tools to make. Closes: #932066 -- Sascha Steinbiss Wed, 17 Jul 2019 23:19:13 +0200 rna-star (2.7.1a+dfsg-1) unstable; urgency=medium * New upstream release. * Refresh patches. -- Sascha Steinbiss Mon, 08 Jul 2019 17:28:41 +0200 rna-star (2.7.0a+dfsg-1) unstable; urgency=medium * New upstream release. This release introduces STARsolo for: mapping, demultiplexing and gene quantification for single cell RNA-seq. * Removed xxd-generated source/parametersDefault.xdd from source tree * Added xxd to build-dependencies * Standards-Version: 4.3.0 - no changes required -- Steffen Moeller Tue, 29 Jan 2019 22:58:57 +0100 rna-star (2.6.1d+dfsg-1) unstable; urgency=medium * New upstream release. * Remove patch applied upstream. -- Sascha Steinbiss Sat, 22 Dec 2018 21:03:02 +0000 rna-star (2.6.1c+dfsg-1) unstable; urgency=medium * New upstream version. -- Steffen Moeller Tue, 23 Oct 2018 13:28:51 +0200 rna-star (2.6.1b+dfsg-1) unstable; urgency=medium * New upstream version. * Bump Standards-Version. -- Steffen Moeller Tue, 18 Sep 2018 18:53:06 +0200 rna-star (2.6.1a+dfsg-1) unstable; urgency=medium * New upstream release. * Fix spelling via patches. -- Sascha Steinbiss Sat, 18 Aug 2018 16:14:17 +0200 rna-star (2.6.0c+dfsg-1) unstable; urgency=medium * New upstream release. -- Sascha Steinbiss Wed, 16 May 2018 08:39:24 +0200 rna-star (2.6.0b+dfsg-1) unstable; urgency=medium * New upstream release. -- Sascha Steinbiss Mon, 07 May 2018 15:09:13 +0200 rna-star (2.6.0a+dfsg-1) unstable; urgency=medium [ Sascha Steinbiss ] * New upstream release. * Remove absent files from Files-Excluded. * Update copyright date. * Drop patch applied by upstream. * Adjust VCS entries. * Use debhelper 11. * Bump Standards-Version. * Update version number in man page. [ Steffen Moeller ] * Add SciCrunch IDs. -- Sascha Steinbiss Thu, 26 Apr 2018 10:14:15 +0200 rna-star (2.5.4b+dfsg-1) unstable; urgency=medium * New upstream release. * Respect nocheck flag in test override. -- Sascha Steinbiss Sun, 11 Feb 2018 13:37:19 +0100 rna-star (2.5.4a+dfsg-1) unstable; urgency=medium [ Sascha Steinbiss ] * New upstream release. * d/control: Remove obsolete Testsuite entry. * d/rules: Remove trailing whitespace. * d/copyright: Use secure copyright format URL. * Spelling fixes. [ Steffen Moeller ] * debian/upstream/metadata: - Updated registry IDs - yamllint cleanliness -- Sascha Steinbiss Fri, 26 Jan 2018 11:32:21 +0100 rna-star (2.5.3a+dfsg-3) unstable; urgency=medium [ Steffen Moeller ] * debian/upstream/metadata: Added refs to bio.tools and OMICtools [ Sascha Steinbiss ] * Remove s390x from supported archs list. Closes: #868742 -- Sascha Steinbiss Thu, 10 Aug 2017 16:05:13 +0200 rna-star (2.5.3a+dfsg-2) unstable; urgency=medium * Upload to unstable. -- Sascha Steinbiss Sun, 18 Jun 2017 21:22:06 +0200 rna-star (2.5.3a+dfsg-1) experimental; urgency=medium * New upstream release. -- Sascha Steinbiss Wed, 31 May 2017 17:41:43 +0200 rna-star (2.5.2b+dfsg-1) unstable; urgency=medium * New upstream release. * Remove x32 from archs. -- Sascha Steinbiss Tue, 23 Aug 2016 12:27:14 +0000 rna-star (2.5.2a+dfsg-4) unstable; urgency=medium * enable rna-star for s390x Closes: #830662 -- Andreas Tille Sun, 10 Jul 2016 08:15:53 +0200 rna-star (2.5.2a+dfsg-3) unstable; urgency=medium * Limit architectures to amd64 as supported by upstream. * Add myself to Uploaders. * Add tests (autopkgtest and build time) -- Sascha Steinbiss Sun, 22 May 2016 12:34:12 +0000 rna-star (2.5.2a+dfsg-2) unstable; urgency=medium * Team upload. * Make build reproducible. - Stop recording build environment in binary. * Enable full hardening. -- Sascha Steinbiss Sat, 21 May 2016 20:53:28 +0000 rna-star (2.5.2a+dfsg-1) unstable; urgency=medium * New upstream version * Use xz compression option in d/watch * cme fix dpkg-control * Fix homepage -- Andreas Tille Thu, 19 May 2016 18:06:56 +0200 rna-star (2.5.1b+dfsg-1) unstable; urgency=medium * New upstream version. * Adjusted debian/watch to accept missing "STAR_" prefix. * Bumped policy compliance to 3.9.7. * Added debian/upstream/edam file. * Moved hunk from compilationstuff.patch to donotuse_own_htslib.patch to collect upstream-independent bits source/Makefile. * Introduced short reference on patches in debian/README.source. -- Steffen Moeller Tue, 23 Feb 2016 17:36:18 +0100 rna-star (2.5.0a+dfsg-1) unstable; urgency=medium * Packaging moved from svn to git * New upstream version -- Andreas Tille Thu, 31 Dec 2015 12:41:06 +0100 rna-star (2.4.2a+dfsg-1) unstable; urgency=medium [ Charles Plessy ] * Remove large GENCODE file, found in later upstream versions. [ Andreas Tille ] * New upstream version -- Andreas Tille Mon, 06 Jul 2015 19:28:49 +0200 rna-star (2.4.0k-1) unstable; urgency=medium * New upstream version (adapted patches) * Solve build issue on mipsel (thanks to Jurica Stanojkovic for the patch) Closes: #781828 -- Andreas Tille Sat, 04 Apr 2015 10:35:14 +0200 rna-star (2.4.0i-1) unstable; urgency=low * Initial release (Closes: #776655) -- Andreas Tille Thu, 29 Jan 2015 14:18:44 +0100