#!/usr/bin/make -f export PYBUILD_NAME=scipy include /usr/share/dpkg/default.mk unexport LDFLAGS export FFLAGS="-fPIC" export ATLAS=None export PATH := $(CURDIR)/debian/extra_bin:$(PATH) export SCIPY_USE_PYTHRAN=0 PY3VERS:= $(shell py3versions -v -s) PY3_DEFAULT:= $(shell py3versions -dv) TMPDIR := $(CURDIR)/build/tmp BASE=$(shell pwd)/debian export SCIPY_USE_PYTHRAN = $(shell if dpkg-query -s python3-pythran >/dev/null 2>/dev/null; then echo 1; else echo 0; fi ) # specify build against generic BLAS/LAPACK. Preferred optimised implementation should be installed # by the end user, not by the package build. export PYBUILD_BUILD_ARGS := -Csetup-args=-Dblas=blas -Csetup-args=-Dlapack=lapack ifneq (,$(filter parallel=%,$(DEB_BUILD_OPTIONS))) export NPY_NUM_BUILD_JOBS = $(DEB_BUILD_OPTION_PARALLEL) export PYBUILD_BUILD_ARGS += -Ccompile-args=-j$(DEB_BUILD_OPTION_PARALLEL) endif # identify if any tests are particularly slow EXTRA_TEST_FLAGS += --durations=20 # some arches time out. Run verbose to see where they got stuck. VERBOSE_ARCH_LIST := mips64el riscv64 sparc64 # 32-bit stability degraded in scipy 1.12 with more tests # getting MemoryError, especially in stats tests # Run verbose to track more closely. ifneq (,$(findstring $(DEB_HOST_ARCH_BITS), 32)) VERBOSE_ARCH_LIST += $(DEB_HOST_ARCH) endif ifneq (,$(findstring $(space)$(DEB_HOST_ARCH)$(space), $(space)$(VERBOSE_ARCH_LIST)$(space))) EXTRA_TEST_FLAGS += -v endif # stats/tests/test_continuous_basic.py::test_cont_basic[500-200-ncf-arg74] test fails with IntegrationWarning # https://github.com/scipy/scipy/issues/14519 # test_data (pooch) needs internet or cached data files SKIP_TEST_LIST += test_cont_basic[500-200-ncf-arg74] test_existence_all test_ascent test_face test_electrocardiogram # multi-Ellipsis indexing in sparse will be dropped in scipy 1.13 # see https://github.com/scipy/scipy/pull/18541 # it fails tests now so skip and reinstate later for scipy 1.13 SKIP_TEST_LIST += test_multiple_ellipsis_slicing ifneq (,$(findstring $(DEB_HOST_ARCH), arm64)) SKIP_TEST_LIST += test_maxiter_worsening[lgmres] endif # linalg/tests/test_decomp.py started segfaulting on armel ifneq (,$(findstring $(DEB_HOST_ARCH), armel)) SKIP_TEST_LIST += test_decomp test_random_exact test_brunnermunzel_normal_dist test_sparse_dense_divide SKIP_TEST_LIST += test_some_code_paths test_gh12218 test_random_state SKIP_TEST_LIST += test_against_anderson_gumbel_r test_bootstrap_against_R test_bootstrap_against_itself_1samp endif ifneq (,$(findstring $(DEB_HOST_ARCH), armhf)) SKIP_TEST_LIST += test_gh12218 test_random_state SKIP_TEST_LIST += test_against_anderson_gumbel_r test_bootstrap_against_R test_bootstrap_against_itself_1samp endif # some tests broken on i386, see https://github.com/scipy/scipy/issues/17839 ifneq (,$(findstring $(DEB_HOST_ARCH), i386)) SKIP_TEST_LIST += test_find_peaks_exact test_find_peaks_withnoise test_x0_equals_Mb[bicgstab] test_rv_sample SKIP_TEST_LIST += test_location_scale[pdf test_examples[True-float64] test_pdf_nolan_samples test_cdf_nolan_samples SKIP_TEST_LIST += ellint_rg_xy0_ipp-ellint_rg_xy0 test_hermitian test_random_state SKIP_TEST_LIST += test_against_anderson_gumbel_r test_bootstrap_against_R test_bootstrap_against_itself_1samp SKIP_TEST_LIST += test_svd_gesdd_nofegfault endif ifneq (,$(findstring $(DEB_HOST_ARCH), mips64el)) # integrate/_ivp/tests/test_ivp.py fail on mips64el # see https://github.com/scipy/scipy/issues/16883 # https://github.com/scipy/scipy/issues/17839#issuecomment-1400636840 SKIP_TEST_LIST += test_first_step test_classes test_integrality test_integrator test_double_integrator SKIP_TEST_LIST += test_nanminmax TestLogM TestExpmFrechet SKIP_TEST_LIST += test_2x2_input test_nx2x2_input test_random_matrices_and_powers # there are also further complex number problems with numpy 2 on mips64el # again see Bug#1094477 and https://github.com/scipy/scipy/issues/21393 SKIP_TEST_LIST += TestCephes TestEllipCarlson TestErf TestFresnel TestHyper SKIP_TEST_LIST += test_boost TestHyp1f1 test_nan_inputs[wofz] test_eval_chebyt_gh20129 SKIP_TEST_LIST += test_sici_consistency test_shichi_consistency test_wrightomega SKIP_TEST_LIST += test_cont_basic test_norm_logcdf # nan arrays are failing tests, https://github.com/scipy/scipy/issues/22360 SKIP_TEST_LIST += test_nan_array SKIP_TEST_LIST += test_axis_nan_policy_axis_is_None[all_nans-propagate-ttest_ci \ test_axis_nan_policy_axis_is_None[mixed-propagate-iqr \ test_axis_nan_policy_axis_is_None[mixed-propagate-ttest_ci \ test_axis_nan_policy_axis_is_None[mixed-propagate-xp \ test_axis_nan_policy_axis_is_None[mixed-omit-xp_var endif # https://github.com/scipy/scipy/issues/17839#issuecomment-1401780853 ifneq (,$(findstring $(DEB_HOST_ARCH), riscv64)) SKIP_TEST_LIST += test_maxiter_worsening[lgmres] test_milp_timeout_16545 endif # test_atol[bicg] only just misses tolerance on s390x, but the design of the test makes it difficult to workaround, # so skip. See https://github.com/scipy/scipy/issues/17839#issuecomment-1399477182 ifneq (,$(findstring $(DEB_HOST_ARCH), s390x)) SKIP_TEST_LIST += test_maxiter_worsening test_atol[bicg] test_distance_transform_cdt05 endif # Bug#1017864 test_kolmogorov.py segfaults on i386 (including hurd) SKIP_KOLMOGOROV_ARCH_LIST := i386 hurd-i386 ifneq (,$(findstring $(space)$(DEB_HOST_ARCH)$(space), $(space)$(SKIP_KOLMOGOROV_ARCH_LIST)$(space))) SKIP_TEST_LIST += TestSmirnovp endif # some tests in linalg test_matfuncs.py fail on several arches # in particular riscv64 hppa sparc64 share many common test failure SKIP_TestLogM_ARCH_LIST := riscv64 hppa sparc64 ifneq (,$(findstring $(space)$(DEB_HOST_ARCH)$(space), $(space)$(SKIP_TestLogM_ARCH_LIST)$(space))) SKIP_TEST_LIST += TestLogM TestExp test_expm SKIP_TEST_LIST += test_random_matrices_and_powers test_2x2_input test_nx2x2_input SKIP_TEST_LIST += test_zoh test_foh test_transferfunction SKIP_TEST_LIST += test_zerospolesgain test_discrete_approx test_simo_tf test_multioutput SKIP_TEST_LIST += test_simo_tf test_multioutput TestC2dLti TestC2dInvariants SKIP_TEST_LIST += test_second_order test_integrator test_double_integrator SKIP_TEST_LIST += test_jordan_block test_array_like TestStep test_operators SKIP_TEST_LIST += test_nan_inputs[airye] test_nan_inputs[sph_harm] endif # some archs fail test_cython (special test_extending) with numpy 1.26 # but will pass with numpy 2 due to complex type changes # see https://github.com/scipy/scipy/issues/21393 SKIP_NEEDS_NUMPY2_ARCH_LIST := mips64el alpha hppa powerpc ppc64 ifneq (,$(findstring $(space)$(DEB_HOST_ARCH)$(space), $(space)$(SKIP_NEEDS_NUMPY2_ARCH_LIST)$(space))) SKIP_TEST_LIST += test_cython endif ifneq (,$(findstring $(DEB_HOST_ARCH), alpha)) SKIP_TEST_LIST += test_read_over64bit_integer_dense test_read_over64bit_integer_sparse endif # hppa runs out of memory in test_bootstrap_against_theory ifneq (,$(findstring $(DEB_HOST_ARCH), hppa)) SKIP_TEST_LIST += test_nodata test_cont_basic[500-200-semicircular-arg89] test_bootstrap_against_theory test_distance_transform_cdt05 SKIP_TEST_LIST += test_onenormest_linear_operator test_against_anderson_gumbel_r test_gh12218 SKIP_TEST_LIST += test_roots_hermite_asy test_bootstrap_against_R bootstrap_against_itself test_against_f_oneway SKIP_TEST_LIST += test_QRVS_shape_consistency[1-d_out1-1-size_out1-qrng1-NumericalInversePolynomial] \ test_QRVS_shape_consistency[None-d_out0-size_in4-size_out4-None-NumericalInversePolynomial] \ test_QRVS_shape_consistency[None-d_out0-size_in4-size_out4-qrng1-NumericalInversePolynomial] \ test_QRVS_shape_consistency[None-d_out0-size_in4-size_out4-qrng2-NumericalInversePolynomial] \ test_QRVS_shape_consistency[3-d_out2-None-size_out0-None-NumericalInversePolynomial] \ test_QRVS_shape_consistency[1-d_out1-size_in4-size_out4-qrng1-NumericalInversePolynomial] \ test_QRVS_shape_consistency[1-d_out1-size_in4-size_out4-qrng2-NumericalInversePolynomial] \ test_QRVS_shape_consistency[1-d_out1-4-size_out2-qrng1-NumericalInversePolynomial] SKIP_TEST_LIST += test_svd_gesdd_nofegfault endif ifneq (,$(findstring $(DEB_HOST_ARCH), hurd-i386)) SKIP_TEST_LIST += test_mip1 test_find_peaks_exact test_find_peaks_withnoise test_examples[True-float64] test_rv_sample test_location_scale[pdf SKIP_TEST_LIST += test_pdf_nolan_samples[pct_range0-alpha_range0-beta_range0] ellint_rg_xy0_ipp-ellint_rg_xy0 SKIP_TEST_LIST += test_logpdf_pdf_consistency test_gh12218 test_ttest_many_dims test_domain_argus_large_chi SKIP_TEST_LIST += test_setting_loc_scale endif # powerpc: failures in stats/tests/test_stats.py: overflow encountered in _hypergeom_* ifneq (,$(findstring $(DEB_HOST_ARCH), powerpc)) SKIP_TEST_LIST += test_hypergeom_cdf test_hypergeom_sf test_nch_hypergeom test_precision test_precise SKIP_TEST_LIST += test_less_greater test_maxiter_worsening[lgmres] test_distance_transform_cdt05 SKIP_TEST_LIST += test_roots_hermite_asy test_bootstrap_against_R bootstrap_against_itself test_against_f_oneway SKIP_TEST_LIST += test_against_anderson_gumbel_r test_gh12218 test_svd_gesdd_nofegfault SKIP_TEST_LIST += test_hyp0f1 test_eval_chebyt_gh20129 # powerpc has problems with all 64-bit numbers (long, int64, etc), skip 'em all SKIP_TEST_LIST += long int64 float64 complex64 complex128 SKIP_TEST_LIST += test_splu_smoketest test_spilu_smoketest test_lu_attr test_threads_parallel SKIP_TEST_LIST += test_hermitian_modes test_real_nonsymmetric_modes test_complex_nonsymmetric_modes SKIP_TEST_LIST += test_sparse_expm_multiply_interval_dtypes test_misc_types test_padecases_dtype_sparse_complex SKIP_TEST_LIST += TestVsNumpyNorm test_dot[int32 "(TestMikotaPair and test_dot[float32)" SKIP_TEST_LIST += test_empty_arithmetic "(TestArithmetic1D and (test_empty_arithmetic or test_sub or test_add0))" SKIP_TEST_LIST += "(sparse and (test_fancy_assignment_dtypes or test_add_sub or test_mu or test_mu or test_eq test_ne or test_lt or test_gt or test_le or test_ge))" SKIP_TEST_LIST += "(sparse and (test_empty_arithmetic or test_sum or test_mean or test_sparse_format_conversions or test_transpose or test_maximum_minimum))" SKIP_TEST_LIST += "(TestCommon1D and (test_add[c or test_radd[c or test_add_dense_to_sparse[c ))" endif # https://github.com/scipy/scipy/issues/17839#issuecomment-1399478853 ifneq (,$(findstring $(DEB_HOST_ARCH), ppc64)) SKIP_TEST_LIST += test_precond_dummy test_maxiter_worsening[lgmres] test_distance_transform_cdt05 SKIP_TEST_LIST += test_hyp0f1 test_eval_chebyt_gh20129 endif ifneq (,$(findstring $(DEB_HOST_ARCH), sparc64)) SKIP_TEST_LIST += test_distance_transform_cdt05 test_milp_timeout_16545 # cython (complex) and stats (nan) failing on sparc64 # see https://github.com/scipy/scipy/issues/22577 SKIP_TEST_LIST += test_wofz test_elliprc test_elliprd test_elliprf test_elliprg test_elliprj \ test_erfc_consistent test_erfcx_consistent test_erfi_consistent test_dawsn_consistent test_wofz_nan_inf \ test_hyp0f1 test_cython_api[airy] test_cython_api[airye] test_cython_api[dawsn] \ test_cython_api[elliprc] test_cython_api[elliprf] test_cython_api[elliprg] test_cython_api[elliprj] \ test_cython_api[erf] test_cython_api[erfc] test_cython_api[erfcx] test_cython_api[erfi] \ test_cython_api[eval_chebyc] test_cython_api[eval_legendre] test_cython_api[eval_sh_chebyt] \ test_cython_api[eval_sh_legendre] test_cython_api[exp1] test_cython_api[expi] test_cython_api[fresnel] test_cython_api[gamma] \ test_cython_api[hankel1] test_cython_api[hankel1e] test_cython_api[hankel2] test_cython_api[hankel2e] \ test_cython_api[hyp0f1] test_cython_api[hyp1f1] test_cython_api[hyp2f1] \ test_cython_api[iv] test_cython_api[ive] test_cython_api[jv] test_cython_api[jve] test_cython_api[kv] test_cython_api[kve] \ test_cython_api[log_ndtr] test_cython_api[loggamma] test_cython_api[ndtr] test_cython_api[psi] test_cython_api[rgamma] \ test_cython_api[shichi] test_cython_api[sici] test_cython_api[wofz] test_cython_api[yv] test_cython_api[yve] \ erf_data_ipp erf_large_data_ipp erf_small_data_ipp test_complex_z \ test_nan_inputs[sph_harm] test_eval_chebyt_gh20129 test_sici_consistency test_shichi_consistency \ test_wrightomega_inf_branch test_wrightomega_inf test_wrightomega_singular test_wrightomega_real_versus_complex \ test_cont_basic[500-alpha-arg0] test_cont_basic[500-crystalball-arg13] test_cont_basic[500-exponnorm-arg19] \ test_cont_basic[500-fatiguelife-arg23] test_cont_basic[500-foldnorm-arg26] test_cont_basic[500-gibrat-arg40] \ test_cont_basic[500-halfnorm-arg46] test_cont_basic[500-invgauss-arg49] test_cont_basic[500-johnsonsu-arg54] \ test_cont_basic[500-levy-arg66] test_cont_basic[500-lognorm-arg71] test_cont_basic[500-moyal-arg76] \ test_cont_basic[500-norm-arg81] test_cont_basic[500-powerlognorm-arg88] test_cont_basic[500-powernorm-arg89] \ test_cont_basic[500-wald-arg113] test_norm_logcdf \ "(special and test_extending and test_cython)" endif ifneq (,$(findstring $(DEB_HOST_ARCH), x32)) SKIP_TEST_LIST += test_input_validation test_basic test_sign test_flexible_input \ test_perm_discrepancy test_integers_nd test_0dim test_0sample test_1sample \ test_bounds test_random_generator test_sample test_continuing \ test_svd_random_state_2 ellint_rg_xy0_ipp-ellint_rg_xy0 test_reset endif %: dh $@ --buildsystem=pybuild execute_after_dh_auto_clean: rm -rf build .pybuild -find $(CURDIR) -name __pycache__ -type d -exec rm -rf {} + -rm -rf doc/source/fontList* -rm -rf doc/source/reference/generated -rm -rf doc/build execute_before_dh_clean: # make sure symlinks to submodules are cleaned up or empty directories from tarball are removed rm -rf doc/source/_static/scipy-mathjax rm -rf scipy/sparse/linalg/_propack/PROPACK for submod_lib in submodules/scipy/_lib/*; do \ submod_libname=`basename $$submod_lib`; \ rm -rf scipy/_lib/$$submod_libname; \ done rm -rf subprojects execute_before_dh_auto_configure: echo "Symlink to submodules" ln -sf ../../../submodules/doc/source/_static/scipy-mathjax doc/source/_static/scipy-mathjax ln -sf ../../../../submodules/scipy/sparse/linalg/_propack/PROPACK scipy/sparse/linalg/_propack/PROPACK for submod_lib in submodules/scipy/_lib/*; do \ submod_libname=`basename $$submod_lib`; \ ln -sf ../../$$submod_lib scipy/_lib/$$submod_libname; \ done ln -sf submodules/subprojects subprojects echo "Building scipy with SCIPY_USE_PYTHRAN=$(SCIPY_USE_PYTHRAN)" execute_before_dh_installdocs-indep: (export MPLCONFIGDIR=. ; \ PYLIBPATH=`pybuild --print build_dir -p$(PY3_DEFAULT) | awk '{print $$3}'`; \ echo "building docs using PYLIBPATH=$$PYLIBPATH"; \ JUPYTER_PLATFORM_DIRS=1 \ PYTHONPATH=$$PYLIBPATH \ HOME=/tmp \ make -C doc html PYTHONPATH=$$PYLIBPATH PYVER=3) || /bin/true override_dh_auto_test: echo "Build-time tests will be run after the installation dir is installed" ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS))) execute_after_dh_auto_install: set -e; \ SKIP_TESTS=""; \ list_initialised=0; \ for t in $(SKIP_TEST_LIST); do \ if [ $${list_initialised} = 0 ]; then \ SKIP_TESTS=$$t; \ list_initialised=1; \ else \ SKIP_TESTS="$${SKIP_TESTS} or $$t"; \ fi; \ done; \ if [ "x$${SKIP_TESTS}" != "x" ]; then \ SKIP_TESTS="not ( $${SKIP_TESTS} )"; \ fi; \ echo "skipping tests: $${SKIP_TESTS}"; \ for py in $(PY3VERS); do \ PYLIBPATH=`pybuild --print build_dir -p$$py | awk '{print $$3}'`; \ (cd $$PYLIBPATH; \ PYTHONPATH=$$PYLIBPATH:$$PYTHONPATH python$$py \ -m pytest $(EXTRA_TEST_FLAGS) -k "$${SKIP_TESTS}"); \ done endif execute_after_dh_python3: dh_numpy3