#!/usr/bin/make -f

#export DH_VERBOSE = 1

export DEB_BUILD_MAINT_OPTIONS = hardening=+all

INCLUDE_PATHS = /usr/include/bamtools

space=
space+=

%:
	dh $@

override_dh_auto_configure:
	dh_auto_configure -- \
	-DCMAKE_INCLUDE_PATH="$(subst $(space),:,$(strip $(INCLUDE_PATHS)))"

override_dh_auto_clean:
	dh_auto_clean
	find -name "*.mk" -delete
	rm -rf bin
	$(RM) \
	  makefile \
	  debian/sniffles.1 \
	  test.vcf \

override_dh_auto_test:
ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
	bin/sniffles-*/sniffles -m test_set/reads_region.bam -v test.vcf
endif

ifeq ($(filter nodoc,$(DEB_BUILD_PROFILES)),)
override_dh_installman: debian/sniffles.1
	dh_installman $^
else
override_dh_installman: ;
endif

%.1: %.1.md
	pandoc --from markdown --to man -s $< -o $@