Source: snpsift Maintainer: Debian Med Packaging Team Uploaders: Pierre Gruet Section: java Priority: optional Build-Depends: debhelper-compat (= 13), antlr4, antlr4-doc, javahelper, junit5, libcommons-math3-java, libcommons-math3-java-doc, libhtsjdk-java, libhtsjdk-java-doc, libmaven-assembly-plugin-java, libmaven-javadoc-plugin-java, libsnpeff-java, libsnpeff-java-doc, libtrove3-java, libtrove3-java-doc, maven-debian-helper Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/snpsift Vcs-Git: https://salsa.debian.org/med-team/snpsift.git Homepage: https://pcingola.github.io/SnpEff/ss_introduction/ Rules-Requires-Root: no Package: libsnpsift-java Architecture: all Depends: ${misc:Depends}, ${maven:Depends} Suggests: ${maven:OptionalDepends} Description: tool to annotate and manipulate genome variants - lib SnpSift is a toolbox that allows one to filter and manipulate annotated files. Once the genomic variants have been annotated, one needs to filter them out in order to find the "interesting / relevant variants". Given the large data files, this is not a trivial task (e.g. one cannot load all the variants into XLS spreadsheet). SnpSift helps to perform this VCF file manipulation and filtering required at this stage in data processing pipelines. . This package contains the library. Package: snpsift Architecture: all Depends: default-jre, ${java:Depends}, ${misc:Depends}, libsnpsift-java (= ${binary:Version}) Suggests: snpeff Description: tool to annotate and manipulate genome variants - tool SnpSift is a toolbox that allows one to filter and manipulate annotated files. Once the genomic variants have been annotated, one needs to filter them out in order to find the "interesting / relevant variants". Given the large data files, this is not a trivial task (e.g. one cannot load all the variants into XLS spreadsheet). SnpSift helps to perform this VCF file manipulation and filtering required at this stage in data processing pipelines. . This package contains the command line tool. Package: libsnpsift-java-doc Architecture: all Section: doc Depends: ${misc:Depends} Recommends: ${maven:DocDepends}, ${maven:DocOptionalDepends} Suggests: libsnpsift-java Multi-Arch: foreign Description: Documentation for SnpSift SnpSift is a toolbox that allows one to filter and manipulate annotated files. Once the genomic variants have been annotated, one needs to filter them out in order to find the "interesting / relevant variants". Given the large data files, this is not a trivial task (e.g. one cannot load all the variants into XLS spreadsheet). SnpSift helps to perform this VCF file manipulation and filtering required at this stage in data processing pipelines. . This package contains the API documentation of libsnpsift-java.