Source: sra-sdk
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Charles Plessy <plessy@debian.org>,
           Andreas Tille <tille@debian.org>,
	   Aaron M. Ucko <ucko@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
               libngs-sdk-dev (>= 2.10.9),
               libncbi-vdb-dev (>= 2.10.6+dfsg-3~),
               libvdb-sqlite-dev,
               libfuse-dev,
               libhdf5-dev,
               libmagic-dev,
               libxml2-dev,
               python3
Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/sra-sdk
Vcs-Git: https://salsa.debian.org/med-team/sra-sdk.git
Homepage: https://github.com/ncbi/sra-tools/
Rules-Requires-Root: no

Package: sra-toolkit
Architecture: amd64
Depends: ${shlibs:Depends},
         libncbi-wvdb2 (>= 2.10.6+dfsg-3~),
         ${misc:Depends}
Recommends: med-config (>= 2.1)
Description: utilities for the NCBI Sequence Read Archive
 Tools for reading the SRA archive, generally by converting individual runs
 into some commonly used format such as fastq.
 .
 The textual dumpers "sra-dump" and "vdb-dump" are provided in this
 release as an aid in visual inspection. It is likely that their
 actual output formatting will be changed in the near future to a
 stricter, more formalized representation[s]. PLEASE DO NOT RELY UPON
 THE OUTPUT FORMAT SEEN IN THIS RELEASE.
 .
 Other tools distributed in this package are:
  abi-dump, abi-load
  align-info
  bam-load
  cache-mgr
  cg-load
  copycat
  fasterq-dump
  fastq-dump, fastq-load
  helicos-load
  illumina-dump, illumina-load
  kar
  kdbmeta
  latf-load
  pacbio-load
  prefetch
  rcexplain
  remote-fuser
  sff-dump, sff-load
  sra-pileup, sra-sort, sra-stat, srapath
  srf-load
  test-sra
  vdb-config, vdb-copy, vdb-decrypt, vdb-encrypt, vdb-get, vdb-lock,
  vdb-passwd, vdb-unlock, vdb-validate
 .
 The "help" information will be improved in near future releases, and
 the tool options will become standardized across the set. More documentation
 will also be provided documentation on the NCBI web site.
 .
 Tool options may change in the next release. Version 1 tool options
 will remain supported wherever possible in order to preserve
 operation of any existing scripts.