#!/usr/bin/make -f # Pregenerated with uuidgen -r DEBIAN_GUID = 806b5c3b-0088-4732-8359-51630950d723 # +pie breaks the build export DEB_BUILD_MAINT_OPTIONS = hardening=+all pkg := sra-toolkit export DEB_CFLAGS_MAINT_APPEND = -I/usr/include/ncbi-vdb export DEB_CXXFLAGS_MAINT_APPEND = -I/usr/include/ncbi-vdb include /usr/share/dpkg/buildflags.mk %: dh $@ --no-parallel OUTDIR=$(CURDIR)/debian/tmp MULTIARCH := $(shell dpkg-architecture -qDEB_HOST_MULTIARCH) override_dh_auto_clean: -dh_auto_clean override_dh_clean: dh_clean rm -f reconfigure build/ld.linux.exe_cmd.sh build/Makefile.config build/Makefile.config.linux.x86_64 rm -rf test/*/actual test/*/tmp.kfg tools/kqsh/kqsh-sra.[ch] override_dh_update_autotools_config: echo "do nothing" override_dh_auto_configure: # output dir will be checked so create it before mkdir -p debian/tmp/usr/lib ln -s /usr/lib/$(MULTIARCH) debian/tmp/usr/lib # # that's no standard configure script lacking support of default options # # --with-debug sets some options that require header files like compiler.h which # is internal to ncbi-vcb and not installed into the package - so this option # should not be used. ./configure --build=$(MULTIARCH) --prefix=$(CURDIR)/debian/tmp/usr --build-prefix=$(CURDIR)/debian/tmp/usr --with-ngs-sdk-prefix=/usr override_dh_auto_build: export LD_LIBRARY_PATH="$$LD_LIBRARY_PATH:$(OUTDIR)/lib"; export OUTDIR=$(OUTDIR) ; make DEB_CFLAGS="$(CFLAGS)" DEB_CXXFLAGS="$(CXXFLAGS)" DEB_LDFLAGS="$(LDFLAGS)" override_dh_auto_install: dh_auto_install -- KONFIG_DIR=$(CURDIR)/debian/sra-toolkit/etc/ncbi override_dh_install: # upstream installs versioned *.a libs - we only want a single version ls -l debian/tmp/usr/bin cd debian/tmp/usr/bin && \ for bin in *-orig.* ; do \ base=$${bin%-orig.*} && \ vbase=$$(readlink "$$(readlink $$base)") && \ vdriver=$$(readlink "$$vbase") && \ mv -v $$bin $$base-orig && \ ln -snfv $${vdriver%%.[0-9]*} $$vbase || exit $$? ; \ done && \ for bin in *[a-z] ; do \ bin2=$$(readlink $$bin) ; \ bin3=$$(readlink "$$bin2") ; \ case $$bin2 in \ $$bin.* ) rm -v $$bin2 && mv -v $$bin3 $$bin || exit $$? ;; \ esac ; \ done dh_install # remove susipcious file which is not executable and conflicts with package magic rm -f debian/*/usr/bin/magic # rename kget which conflicts with kget download manager (see #851219) mv debian/$(pkg)/usr/bin/kget debian/$(pkg)/usr/bin/vdb-get # Formally supply a standard installation ID to satisfy sratools echo '/LIBS/GUID = "$(DEBIAN_GUID)"' >debian/$(pkg)/etc/ncbi/debian.kfg override_dh_auto_test: ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS))) dh_auto_test --no-parallel -- -k endif override_dh_prep: dh_prep -X debian/tmp