Source: ssake Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Charles Plessy Section: science Priority: optional Build-Depends: debhelper-compat (= 13), markdown Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/ssake Vcs-Git: https://salsa.debian.org/med-team/ssake.git Homepage: https://www.bcgsc.ca/platform/bioinfo/software/ssake Rules-Requires-Root: no Package: ssake Architecture: all Depends: ${misc:Depends}, ${perl:Depends}, python3, libperl4-corelibs-perl Suggests: ssake-examples Description: genomics application for assembling millions of very short DNA sequences The Short Sequence Assembly by K-mer search and 3′ read Extension (SSAKE) is a genomics application for aggressively assembling millions of short nucleotide sequences by progressively searching for perfect 3′-most k-mers using a DNA prefix tree. SSAKE is designed to help leverage the information from short sequences reads by stringently clustering them into contigs that can be used to characterize novel sequencing targets. Package: ssake-examples Architecture: all Depends: ${misc:Depends}, ssake Description: example data for SSAKE, a genomic assembler of short reads This package contains test sequences for SSAKE, a genomics application for assembling millions of very short DNA sequences. . Instructions about how to use the test data can be found in /usr/share/doc/ssake/SSAKE.readme.gz after the package `ssake' is installed.