Source: stacks Maintainer: Debian Med Packaging Team Uploaders: Tim Booth , Andreas Tille Section: science Priority: optional Build-Depends: debhelper (>= 11~), python, zlib1g-dev, libbam-dev, libsparsehash-dev (>= 2.0), samtools, libhts-dev Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/stacks Vcs-Git: https://salsa.debian.org/med-team/stacks.git Homepage: http://creskolab.uoregon.edu/stacks/ Package: stacks Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}, samtools, libdbi-perl Recommends: libspreadsheet-writeexcel-perl Description: pipeline for building loci from short-read DNA sequences Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography. . Note that this package installs Stacks such that all commands must be run as: $ stacks Package: stacks-web Architecture: all Depends: ${shlibs:Depends}, ${misc:Depends}, apache2 | httpd, default-mysql-server | virtual-mysql-server, libapache2-mod-php | php-cgi, libdbd-mysql-perl, php-mdb2-driver-mysql Recommends: stacks Description: web interface for displaying loci from short-read sequences Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography. . This package provides the web-based viewer which you can use to examine Stacks output that has been loaded into a MySQL database.