Source: stacks Maintainer: Debian Med Packaging Team Uploaders: Tim Booth , Andreas Tille Section: science Priority: optional Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbam-dev, libsparsehash-dev, samtools, libhts-dev Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/stacks Vcs-Git: https://salsa.debian.org/med-team/stacks.git Homepage: https://creskolab.uoregon.edu/stacks/ Rules-Requires-Root: no Package: stacks Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends}, samtools, libdbi-perl Recommends: libspreadsheet-writeexcel-perl, python3, littler Conflicts: stacks-web Provides: stacks-web Replaces: stacks-web Description: pipeline for building loci from short-read DNA sequences Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography. . Note that this package installs Stacks such that all commands must be run as: $ stacks