#!/usr/bin/make -f
export DH_VERBOSE = 1

include /usr/share/dpkg/default.mk

export DEB_BUILD_MAINT_OPTIONS = hardening=+all
export DEB_CFLAGS_MAINT_APPEND  = -Wall -pedantic -I/usr/include/bamtools/api/
export DEB_CXXFLAGS_MAINT_APPEND  = -Wall -pedantic -I/usr/include/bamtools/api/

%:
	dh $@

override_dh_auto_build:
	dh_auto_build -- 'LINKER=$$(CXX)'

# Disabling tests, as they require network access. In future, a multiple
# upstream tarball could be created to pull in the required test files.
override_dh_auto_test:
ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
	echo "Disabling tests, as they require network access."
endif

override_dh_auto_clean:
	dh_auto_clean
	rm -fr test_data
	rm -f SuperReads_RNA/global-1/SuperReadsR/all_tests

override_dh_install:
	dh_install prepDE.py3 usr/bin
	mv debian/$(DEB_SOURCE)/usr/bin/prepDE.py3 debian/$(DEB_SOURCE)/usr/bin/prepDE.py