Source: t-coffee
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>,
           Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 12)
Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/t-coffee
Vcs-Git: https://salsa.debian.org/med-team/t-coffee.git
Homepage: http://www.tcoffee.org/Projects/tcoffee/index.html
Rules-Requires-Root: no

Package: t-coffee
Architecture: any
Depends: ${shlibs:Depends},
         ${misc:Depends}
Recommends: amap-align,
            clustalo,
            clustalw,
            dialign-tx,
            fsa,
            kalign,
            libsoap-lite-perl,
            libxml-simple-perl,
            mafft,
            muscle,
            mustang,
            ncbi-blast+,
            poa,
            prank,
            probcons,
            proda,
            tm-align
Suggests: boxshade,
          seaview,
          t-coffee-examples
Description: Multiple Sequence Alignment
 T-Coffee is a multiple sequence alignment package. Given a set of
 sequences (Proteins or DNA), T-Coffee generates a multiple sequence
 alignment. Version 2.00 and higher can mix sequences and structures.
 .
 T-Coffee allows the combination of a collection of multiple/pairwise,
 global or local alignments into a single model. It can also
 estimate the level of consistency of each position within the new
 alignment with the rest of the alignments. See the pre-print for more
 information
 .
 T-Coffee has a special called M-Coffee that makes it possible to combine the
 output of many multiple sequence alignment packages. In its published version,
 it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and
 T-Coffee.  A special version has been made for Debian, DM-Coffee, that uses
 only free software by replacing Clustal W by Kalign. Using the 8 Methods of
 M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite
 methods if you prefer.

Package: t-coffee-examples
Architecture: all
Multi-Arch: foreign
Depends: ${misc:Depends}
Recommends: t-coffee
Breaks: t-coffee (<< 13)
Replaces: t-coffee (<< 13)
Description: annotated examples for the use of T-Coffee
 To help increasing the proficiency in the use of T-Coffee, this
 package provides examples for input sequences and their proper
 alignment.