Source: toppred Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Section: science Priority: optional Build-Depends: debhelper-compat (= 13), gnuplot, libgd-dev Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/toppred Vcs-Git: https://salsa.debian.org/med-team/toppred.git Homepage: https://github.com/bioinfo-center-pasteur-fr/toppred Rules-Requires-Root: no Package: toppred Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends} Description: transmembrane topology prediction Toppred is a program to determine the topology of a transmembrane protein based on G. von Heijne algorithm. . Each sequence from seq data in fasta format is processed, and toppred generate the Hydrophobycity profile of the sequence, and the corresponding hydrophobycities values in the file sequence-ID.hydro. . Furthermore, the predicted topologies are represented as png images. Each topology is stored in file sequence-ID-number.png . The hydrophobicity profile is computed using a window formed by a core rectangular window of size n, flanked by 2 triangular windows of size q. NB rectangular and triangular mean that the ponderation values inside those windows are respectively constant and variable. . This program is a new implementation of the original toppred program, based on G. von Heijne algorithm