Source: vdjtools Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , tony mancill Section: non-free/science XS-Autobuild: no Priority: optional Build-Depends: debhelper-compat (= 13), default-jdk, gradle-debian-helper, javahelper, maven-repo-helper Build-Depends-Indep: groovy, libcommons-lang3-java, libgpars-groovy-java, libmilib-java, libcommons-math3-java, junit4 Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/vdjtools Vcs-Git: https://salsa.debian.org/med-team/vdjtools.git Homepage: https://github.com/mikessh/vdjtools Rules-Requires-Root: no Package: libvdjtools-java Architecture: all Section: non-free/java Depends: ${java:Depends}, ${misc:Depends} Description: Java library of vdjtools The VDJtools are interacting with the R statistics environment to characterize the constitution of the immune repertoire of B and T cells. This package provides the Java library. Package: vdjtools Architecture: all Depends: ${misc:Depends}, libvdjtools-java, default-jre Recommends: r-cran-ape, r-cran-ggplot2, r-cran-gplots, r-cran-mass, r-cran-plotrix, r-cran-rcolorbrewer, r-cran-reshape, r-cran-reshape2, r-cran-scales, r-cran-gridbase, r-cran-gridextra, r-cran-circlize, r-cran-venndiagram, r-cran-ffield Description: framework for post-analysis of B/T cell repertoires VDJtools is an open-source Java/Groovy-based framework designed to facilitate analysis of immune repertoire sequencing (RepSeq) data. VDJtools computes a wide set of statistics and is able to perform various forms of cross-sample analysis. Both comprehensive tabular output and publication-ready plots are provided. . The main aims of the VDJtools Project are: . * To ensure consistency between post-analysis methods and results * To save the time of bioinformaticians analyzing RepSeq data * To create an API framework facilitating development of new RepSeq analysis applications * To provide a simple enough command line tool so it could be used by immunologists and biologists with little computational background