#!/usr/bin/make -f # Uncomment this to turn on verbose mode. #export DH_VERBOSE=1 %: dh $@ --no-parallel pkg=velvet override_dh_auto_clean : # If tarball was not pre-cleaned this will do it. dh_auto_clean rm -rf zlib rm -rf third-party rm -rf debian.upstream rm -f *.pdf find -name '._*' -delete rm -rf contrib/MetaVelvet* rm -rf contrib/VelvetOptimiser* build_long_versions : touch zlib #Make _long version dh_auto_build -- LONGSEQUENCES=Y OPENMP=Y velveth velvetg OPENMP=1 CPPFLAGS="$(CPPFLAGS)" CFLAGS="$(CFLAGS)" LDFLAGS="$(LDFLAGS)" mv velveth velveth_long ; mv velvetg velvetg_long #Make _63 kmer version dh_auto_build -- MAXKMERLENGTH=63 velveth velvetg OPENMP=1 CPPFLAGS="$(CPPFLAGS)" CFLAGS="$(CFLAGS)" LDFLAGS="$(LDFLAGS)" mv velveth velveth_63 ; mv velvetg velvetg_63 #And also one with both options dh_auto_build -- MAXKMERLENGTH=63 LONGSEQUENCES=Y OPENMP=Y velveth velvetg OPENMP=1 CPPFLAGS="$(CPPFLAGS)" CFLAGS="$(CFLAGS)" LDFLAGS="$(LDFLAGS)" mv velveth velveth_63_long ; mv velvetg velvetg_63_long #Make _127 kmer version dh_auto_build -- MAXKMERLENGTH=127 velveth velvetg OPENMP=1 CPPFLAGS="$(CPPFLAGS)" CFLAGS="$(CFLAGS)" LDFLAGS="$(LDFLAGS)" mv velveth velveth_127 ; mv velvetg velvetg_127 #And also one with both options dh_auto_build -- MAXKMERLENGTH=127 LONGSEQUENCES=Y OPENMP=Y velveth velvetg OPENMP=1 CPPFLAGS="$(CPPFLAGS)" CFLAGS="$(CFLAGS)" LDFLAGS="$(LDFLAGS)" mv velveth velveth_127_long ; mv velvetg velvetg_127_long override_dh_auto_build : build_long_versions touch zlib # prevents the zlib in the ‘third-party’ folder to be built. dh_auto_build -- OPENMP=1 CPPFLAGS="$(CPPFLAGS)" CFLAGS="$(CFLAGS)" LDFLAGS="$(LDFLAGS)" dh_auto_build -- color OPENMP=1 CPPFLAGS="$(CPPFLAGS)" CFLAGS="$(CFLAGS)" LDFLAGS="$(LDFLAGS)" override_dh_install : # mkdir -p debian/$(pkg)/usr/share/man/man1/ # help2man --no-info --name="simple hashing program" \ # ./velveth > debian/$(pkg)/usr/share/man/man1/velveth.1 # help2man --no-info --name="simple hashing program (colorspace version)" \ # ./velveth_de > debian/$(pkg)/usr/share/man/man1/velveth_de.1 # help2man --no-info --version-option=" " \ # --name="de Bruijn graph construction, error removal and repeat resolution" \ # ./velvetg > debian/$(pkg)/usr/share/man/man1/velvetg.1 # help2man --no-info --version-option=" " \ # --name="de Bruijn graph construction, error removal and repeat resolution (colorspace version)" \ # ./velvetg_de > debian/$(pkg)/usr/share/man/man1/velvetg_de.1 dh_install # remove extra copies of GPL find $(CURDIR)/debian -type f -name 'LICENSE*' -delete #MetaVelvet should be scrubbed, and VelvetOptimiser is now separate. Note that these #will not have been installed if this was a binarry-only build. [ ! -e debian/velvet-example/usr ] || \ cp debian/VelvetOptimiser.README debian/velvet-example/usr/share/doc/velvet/contrib/ override_dh_installexamples-indep: dh_installexamples -i xz -6 debian/velvet-example/usr/share/doc/velvet/examples/* sed -i 's?=\.\./velvet?=/usr/bin/velvet?' debian/velvet-tests/usr/share/doc/velvet/tests/run-tests.functions #Prevent compression of user manual and sample code override_dh_compress : dh_compress -X.pdf -X.c -X.pl -X.h -X.xz override_dh_pysupport : #Not needed, Python scripts are just for examples