Source: wtdbg2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Section: science Priority: optional Build-Depends: debhelper-compat (= 13), zlib1g-dev, libsimde-dev Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/wtdbg2 Vcs-Git: https://salsa.debian.org/med-team/wtdbg2.git Homepage: https://github.com/ruanjue/wtdbg2 Rules-Requires-Root: no Package: wtdbg2 Architecture: amd64 Depends: ${shlibs:Depends}, ${misc:Depends} Suggests: ${perl:Depends}, minimap2, samtools, mummer, wtdbg2-examples Description: de novo sequence assembler for long noisy reads Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and then builds the consensus from intermediate assembly output. Wtdbg2 is able to assemble the human and even the 32Gb Axolotl genome at a speed tens of times faster than CANU and FALCON while producing contigs of comparable base accuracy. . During assembly, wtdbg2 chops reads into 1024bp segments, merges similar segments into a vertex and connects vertices based on the segment adjacency on reads. The resulting graph is called fuzzy Bruijn graph (FBG). It is akin to De Bruijn graph but permits mismatches/gaps and keeps read paths when collapsing k-mers. The use of FBG distinguishes wtdbg2 from the majority of long-read assemblers. Package: wtdbg2-examples Architecture: all Depends: ${misc:Depends} Enhances: wtdbg2 Multi-Arch: foreign Description: Examples for wtdbg - de novo sequence assembler Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and then builds the consensus from intermediate assembly output. Wtdbg2 is able to assemble the human and even the 32Gb Axolotl genome at a speed tens of times faster than CANU and FALCON while producing contigs of comparable base accuracy. . This package contains a test data set as well as sample scripts running some test suite provided by Debian also as autopkgtest.