-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Wed, 05 Dec 2018 21:19:35 -0500 Source: ncbi-entrez-direct Binary: ncbi-entrez-direct Architecture: source Version: 10.5.20181204+ds-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> Changed-By: Aaron M. Ucko <ucko@debian.org> Description: ncbi-entrez-direct - NCBI Entrez utilities on the command line Closes: 901028 Changes: ncbi-entrez-direct (10.5.20181204+ds-1) unstable; urgency=medium . * New upstream release. * (debian/).gitignore: Update per GOPATH change. * debian/control: - Build-depend on dh-golang, golang-github-dataence-porter2-dev, golang-github-fatih-color-dev, golang-github-klauspost-cpuid-dev, golang-github-rainycape-unidecode-dev, and golang-github-shirou-gopsutil-dev. - Set Built-Using (with the help of dh-golang). - Bump minimum Go version to 1.10 for strings.Builder. - Depend on libxml-simple-perl. - Repoint Vcs-{Browser,Git} at salsa.debian.org. - Rules-Requires-Root: no (confirmed safe). - Standards-Version: 4.2.1 (compliant at this point). * debian/examples: Remove local storage/indexing scripts (considered official enough for /usr/bin at this point), leaving only asp-* and has-asp, which promote non-free software; add test-pubmed-index. * debian/man/{archive-pubmed,download-pubmed,download-sequence,eblast, fetch-pubmed,index-pubmed,intersect-uid-lists,(local-)phrase-search, pm-clean,pm-erase,pm-invert,pm-log,pm-merge,pm-prepare,pm-promote, pm-refresh,pm-repack,pm-stash,pm-uids,pm-verify,protein-neighbors,rchive, stream-pubmed,transmute}.1: Document newly added tools. * debian/man/{edirect,nquire,xtract}.1: Fix old documentation bugs. * debian/man/{efetch,efilter,elink,entrez-phrase-search,ftp-cp,ftp-ls, nquire,xtract}.1: Update for new release. * debian/rules: - Change (autopopulated) GOPATH to meet dh-golang's expectations. - Belatedly run dh --with=golang to populate (misc:)Built-Using. - Clean up remaining cruft from when Go support was optional. - Pull github.com/surgebase/porter2 (aka gh.c/dataence/porter2), github.com/fatih/color (along with its dependencies github.com/mattn/go-{colorable,isatty}), github.com/klauspost/cpuid, github.com/rainycape/unidecode (aliased, per rchive.go's expectations, to github.com/fiam/gounidecode/unidecode), github.com/shirou/gopsutil (along with its dependency golang.org/x/sys/unix), and our ersatz github.com/pbnjay/memory into the path. (The rainycape version of unidecode has the key advantages of being fresher and already packaged for Debian.) - Build rchive.go in addition to xtract.go; build both against a common.go factored out of xtract.go. - Install run-ncbi-converter (accidentally left off earlier). - Flip Perl scripts back to running via /usr/bin/perl (from /usr/bin/env perl). - Enforce use of Go version 1.10 or newer, even if the default is older. - Install local storage/indexing scripts to /usr/bin. (Closes: #901028.) - Install new eblast wrapper (corresponding to new -blast mode) and protein-neighbors script. * debian/vendor/github.com/pbnjay/memory/memory.go: New wrapper around github.com/shirou/gopsutil/mem, filling in for a different third-party library that lacks a declared license. 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