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Hash: SHA256
Format: 1.8
Date: Sun, 29 May 2022 10:42:09 +0200
Source: apbs
Binary: apbs apbs-data apbs-dbgsym apbs-doc libapbs-dev libapbs3 libapbs3-dbgsym libfetk-dev libfetk1.9 libfetk1.9-dbgsym python3-apbslib python3-apbslib-dbgsym
Architecture: source all amd64
Version: 3.4.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Changed-By: Drew Parsons <dparsons@debian.org>
Description:
apbs - Adaptive Poisson Boltzmann Solver
apbs-data - data files for APBS (Adaptive Poisson Boltzmann Solver)
apbs-doc - Adaptive Poisson Boltzmann Solver
libapbs-dev - Adaptive Poisson Boltzmann Solver
libapbs3 - Adaptive Poisson Boltzmann Solver
libfetk-dev - FETK libraries for APBS (development headers)
libfetk1.9 - FETK libraries for APBS (shared libraries)
python3-apbslib - Adaptive Poisson Boltzmann Solver
Changes:
apbs (3.4.1-1) unstable; urgency=medium
.
* Team upload.
* New upstream release.
- requires FETK
- Build-Depends: pybuild-plugin-pyproject, python3-pybind11
- drop deprecated debian patches debian_make.patch and
link_libapbs_routines.patch
* provide FETK external source as a git subtree in
debian/external_deps/fetk. Source is pulled from
https://github.com/Electrostatics/FETK, the required
version is specified in the toplevel apbs CMakeLists.txt
- pull FETK 1.9.3 (commit 57195e5) to use system SuperLU
- patch to use system maloc (don't build local maloc)
- patch mc and punc with BLA_STATIC OFF to used BLAS shared
libraries, and don't specify BLA_VENDOR OpenBLAS (use generic
blas to allow for alternative optimised BLASes)
- build FETK libraries (libmc.so, libgamer.so, libpunc.so,
also punc components libcgcode.so, libvf2c.so)
with soname set by FETK project minor version (currently 1.9)
- provide FETK libraries in libfetk-dev and libfetk1.9 packages.
- FETK copyright licence is LGPL-2.1+
- Build-Depends: libsuitesparse-dev (for libumfpack),
libarpack2-dev
* python3-apbslib provides both apbs and apbslib python modules
* update debian/rules
- specify cmake build with source at top level
- specify APBS_STATIC_BUILD=Off
* update debian patch python3.patch to fix check of PYTHON_MAX_VERSION
and only copy python library files to a pdb2pka dir it exists
* add debian patch cmake.patch
- adjusts upstream cmake files to install headers in
/usr/include/apbs, and don't install (unformed) docs
- add RPC_CFLAGS (/usr/include/tirpc) to CFLAGS in
ImportFETK.cmake to include FETK RPC support.
Build-Depends: libtirpc-dev (using pkg-config)
- treat PYTHON_VERSION (3.6) as minimum not exact version
- skip RPATH in shared library build (CMAKE_SKIP_RPATH=ON)
* provide apbs-doc package
- build user docs with sphinxdoc, libjs-mathjax
- Build-Depends-Indep: python3-sphinx-rtd-theme
* fix ©,Å symbols with UTF-8 via debian patch
fix_spelling_errors.patch and direct in FETK
* add apbs_check_intermediate_energies.py to
debian patch wrong-path-for-interpreter.patch and replace with
"env python3" as needed (following upstream more closely)
* update upstream source to https://github.com/Electrostatics/apbs
* upstream source no longer includes pdb2pqr, don't need to
exclude it and repackage the source (drop +dfsg1)
* Standards-Version: 4.6.0
* lintian updates
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