-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Wed, 09 Apr 2025 21:31:32 -0400 Source: sra-sdk Architecture: source Version: 3.2.1+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> Changed-By: Aaron M. Ucko <ucko@debian.org> Closes: 1084404 1087096 1099933 Changes: sra-sdk (3.2.1+dfsg-3) unstable; urgency=medium . * Upload to unstable. * debian/salsa-ci.yml: Disable use of experimental (build-)deps again. . sra-sdk (3.2.1+dfsg-2) experimental; urgency=medium . * debian/control: Build-depend on python3-setuptools. * debian/patches/fix_arm64_build.patch: Correct parenthesis placement. * debian/patches/setuptools.patch (new): Substitute setuptools for distutils (retired) in ngs/ngs-python/setup.py. * debian/rules: - Set PIP_BREAK_SYSTEM_PACKAGES for upstream's test suite. - Substitute pybuild for direct setup.py invocation and clean up after it. * .gitignore: Add .pc (belatedly) and .pybuild. . sra-sdk (3.2.1+dfsg-1) experimental; urgency=medium . [ Andreas Tille ] * New upstream version 3.1.1. * Fix Python3.12 string syntax Closes: #1087096 * Do not fail if clean target debian/libngs-jni.links does not exist . [ Aaron M. Ucko ] * New upstream version 3.2.1. * debian/control: - Tighten libncbi-vdb-dev build dependency as usual; add one on python3-vdb (provided by ncbi-vdb-data for now, to be split off post-Trixie.) - Drop vestigial build dependency on libfuse-dev. (Closes: #1084404.) * debian/copyright: Update GPL logistics (see #1080497) and bm and spdlog paths. * debian/patches: Update accordingly. Notably: - label_online_tests.patch: Add a couple dozen additional tests. - missing_include.patch: Drop, superfluous at this point. - support_libre2-11.patch: Cover new additions to fastq_defline_matcher.hpp. - use_debian_packaged_re2.patch: Cover new test-sharq-reader. * debian/rules: - Stop generating and installing debian.kfg, taken over by ncbi-vdb-data. - Clean up additional build output. * debian/salsa-ci.yml: Reenable use of experimental (build-)deps for now. * debian/tests/control: Per Stefano Rivera (thanks!), declare a dependency on ca-certificates and the need for Internet access. (Closes: #1099933.) * .gitignore: Add, belatedly. * Standards-Version: 4.7.2 (routine-update) Checksums-Sha1: 6c06a6c7f5eae7f5a1215fbb817995c01a02cfd0 3003 sra-sdk_3.2.1+dfsg-3.dsc e69709d24f8b14573413b868b9e45084d5ee6ee1 3794904 sra-sdk_3.2.1+dfsg-3.debian.tar.xz Checksums-Sha256: 34dd7d1bd083617a16213345eb78fadfd9b7e8cff934da4d6e95674e71a8975f 3003 sra-sdk_3.2.1+dfsg-3.dsc 02a36ed7915e70946e9d7ba2e0312166fe7652edf83968671f083d31b18d398b 3794904 sra-sdk_3.2.1+dfsg-3.debian.tar.xz Files: a34833d499170503b6a9ec2b3cbfb07a 3003 science optional sra-sdk_3.2.1+dfsg-3.dsc 15e92455fb8fa9330666435047601cc0 3794904 science optional sra-sdk_3.2.1+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEfDq5z9IwvTDdAJxZHnCRsfFKZKIFAmf3IRoACgkQHnCRsfFK ZKKMSw//YD1lYRAcQHyYLQyn2GxIqG49E5j6xQfDzTqncu6l5Y2lwkYnWQdVXDVp 0hQogr4hZP8qQGFU8YcROoEne0BzkJtASPNVixfP0XqsSnaWSgWdgC5ZSwFWRRbz y1LlBrFoUF2yUfs6QpCrjN/MemYmr8kNv29b9f3lSmLdREjuPNLEqp2nDKA0c9at O2A3JD2WddqzQuWkK1ZPBmbvVNGzKlMTUpvK4QnArYTZngUXw+ljkaZ/oOVjEA10 RjZ35N0A0PZOzU99w0xU5dHEPeJXvch9msjjAP/pD3XS5Zl+6IwrA+gB8tktNNK4 xVqMG/+ZUr9aDdIC3nvXugXFuDQef3N35Gwi5N1lscuLSdnO4R+ejl+McX9XE+oX 75wLJdTRQxCfG83rZ6kaqOXKvz+/sIAaAuk83Mh8PdvV8dCNUJFLyObdf6FPblkr wLmVKdDX+8bjdNFOykpXKOR0l0JtaeiXrMpYeoCUGyIFXkGWq5G20bxQb3NgETdK Au2scfX2a5I24pa3oCB845dGr/TC3fFVZs3D++/pHFpfLCUVu4J+8lTslAwByh6p yqqEmJHiyfGegGUauGv/lmzS2Esj987zCW+LDo6JBMVvcrS3xHxnMTIkYWCHLHIl 3zv/HXMENUMdwGYD7P6pREFi9x8dfCW7U8ogHAzMmiwDn9liL3s= =Ihi9 -----END PGP SIGNATURE-----