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Hash: SHA512
Format: 1.8
Date: Wed, 09 Apr 2025 23:21:37 -0400
Source: ncbi-entrez-direct
Architecture: source
Version: 23.8.20250408+dfsg-1
Distribution: experimental
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Aaron M. Ucko <ucko@debian.org>
Changes:
ncbi-entrez-direct (23.8.20250408+dfsg-1) experimental; urgency=medium
.
* New upstream release.
* debian/NEWS: Note that manpages are at least temporarily out of the
picture to reduce maintenance overhead.
* debian/control:
- Add B-Ds on golang-github-goccy-go-yaml-dev and
golang-github-komkom-toml-dev.
- Suggest golang-any for the sake of scripts that build specialized
binaries on the fly.
* debian/install: Install new data tree to ncbi-entrez-direct; also
throw in eutils and extern for the sake of scripts that build
specialized binaries on the fly.
* debian/man/{archive-{pmc,pubmed},cit2pmid,csv2xml,custom-index,
download-ncbi-data,download-pubmed,edict,efetch,elink,expand-current,
fetch-{pmc,pubmed},index-extras,phrase-search,pm-*,pma2pme,rchive,
stream-pubmed,theme-aliases,transmute,xtract}.1: Update through
20.4.20230911(+dfsg).
* debian/man/{archive-taxonomy,fetch-{local,taxonomy},gm2segs,ini2xml,
pma2apa,pmc2{bioc,info},yaml2xml}.1: Document new commands.
* debian/man/elink.1: Belatedly clean up with Perl implementation gone.
* debian/man/index-pubmed.1: Retire.
* debian/manpages: Rename to manpages.disabled for now.
* debian/rules:
- Install new as-is scripts bsmp2info, ecollect, filter-record, fsa2xml,
gff-sort, gff2xml, gm2segs, ini2xml, jsonl2xml, just-top-hits,
pair-at-a-time, pma2apa, pmc2bioc, pmc2info, print-missing-subranges,
quote-grouped-elements, refseq-nm-cds, sort-by-length,
systematic-mutations, and yaml2xml.
- Install all download-* and gbf2* scripts as is, including some new
ones.
- Install all archive-* scripts (including some new ones) and the new
local-archive scripts xfetch, xfilter, xinfo, xlink, and xsearch with
library-directory substitutions.
- Reflect upstream retirement of fetch-*, index-extras, index-pubmed,
phrase-search, and stream-pubmed, superseded by xfetch et al.
- Enable use of github.com/goccy/go-yaml, github.com/komkom/toml, and
(indirectly, no B-Ds needed) github.com/pkg/errors,
github.com/stretchr/{objx,testify}, and golang.org/x/xerrors.
* debian/.gitignore: Ignore .debhelper.
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