-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Thu, 24 Sep 2026 20:56:51 +0200 Source: relion-cuda Architecture: source Version: 5.1.0+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> Changed-By: Andreas Tille <tille@debian.org> Closes: 1036681 1040128 1147432 Changes: relion-cuda (5.1.0+dfsg-1) unstable; urgency=medium . [ Pierre Gruet ] * New upstream version 5.0.1+dfsg: - Repacking without embedded copy of Eigen * Adding B-D on libtorch-dev * Raising Standards version to 4.7.3: - Removing Priority: optional, which is default . [ Yavor Doganov ] * New upstream release. * debian/patches/0001-Repair-wrong-comment-sign...patch: Delete; was cherry-picked from upstream. * debian/patches/typos.patch: Remove hunks applied upstream; fix more spelling errors. * debian/patches/format-security.patch: New; fix FTBFS with -Werror=format-security. * debian/patches/python3.patch: New; migrate the relion_it script from Python 2 to 3 as it's the core of on-the-fly processing. * debian/patches/system-eigen.patch: New; use the system Eigen library. * Run wrap-and-sort -ast. * debian/control - (Build-Depends): Remove fluid (unnecessary). Add libpng-dev, dh-sequence-python3, python3 and libeigen3-dev. - (relion-cuda) <Depends>: Add ctffind (<< 5). <Recommends>: Add ghostscript (for generating PDF files), pbzip2, xz-utils and zstd (for reading compressed MRC movies). - (relion-gui-cuda) <Depends>: Add ${python3:Depends} and python3-tk. (Breaks, Replaces): Remove; obsolete. (Rules-Requires-Root): Remove; it's the default. * debian/rules: Enable full hardening. (CONFIGURE_COMMON): Remove redundant flags that are already set by debhelper's cmake build system. Fix FTBFS with CMake 4 by adding -DCMAKE_POLICY_VERSION_MINIMUM=3.5. Add -DPYTHON_EXE_PATH=/usr/bin/python3 to override upstream's test which relies on a Conda environment. (NUMJOBS, MAKE_-J): Remove; gymnastics no longer necessary. (override_dh_auto_configure): Run dh_auto_configure with CUDA=ON and CMAKE_CUDA_HOST_COMPILER=/usr/bin/cuda-gcc. (override_dh_auto_build): Remove; redundant. (override_dh_auto_clean): Likewise. (override_dh_auto_install): Run dh_auto_install --destdir. Rename scripts with .py extension to fix W: script-with-language-extension. Delete Python/Bash scripts which will fail due to missing modules. * debian/relion-gui-cuda.install: Install schemes in /usr/share/relion. * debian/README.Debian: New file; document missing functionality. * debian/watch: Upgrade to version 5. * debian/salsa-ci.yml: Use the default recipe. * debian/copyright: Update copyright years, fix superfluous patterns, add EPL and MPL-2 licenses. . [ Andreas Tille ] * New upstream version * Standards-Version: 4.7.4 (routine-update) * Build-Depends: pybuild-plugin-pyproject (routine-update) * Add missing build-dependency on python3-setuptools. * debputy lint --auto-fix (routine-update) * d/copyright: - Drop unused licenses - Do not mention removed src/Eigen - Use link to /usr/share/common-licenses/MPL-2.0 instead of full text * Fix FTBFS with Eigen 5 * debian/rules: relion_schemegui is installed without a .py suffix since upstream 5.1.0; adjust the script renaming in override_dh_auto_install. * New upstream release fixes relion-cuda FTBFS with CUDA 12 (nvcc no longer supports sm_35) and with cub 2.0.1. 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