-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Sat, 04 Dec 2010 22:30:35 +0100
Source: python-cogent
Binary: python-cogent
Architecture: source amd64
Version: 1.5-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Steffen Moeller <moeller@debian.org>
Description:
python-cogent - framework for genomic biology
Changes:
python-cogent (1.5-1) unstable; urgency=low
.
* Bumped standard to 3.9.1, no changes required.
* New upstream version.
- major additions to Cookbook
- added AlleleFreqs attribute to ensembl Variation objects.
- added getGeneByStableId method to genome objects.
- added Introns attribute to Transcript objects and an Intron class.
- added Mann-Whitney test and a Monte-Carlo version
- exploratory and confirmatory period estimation techniques (suitable for
symbolic and continuous data)
- Information theoretic measures (AIC and BIC) added
- drawing of trees with collapsed nodes
- progress display indicator support for terminal and GUI apps
- added parser for illumina HiSeq2000 and GAiix sequence files as
cogent.parse.illumina_sequence.MinimalIlluminaSequenceParser.
- added parser to FASTQ files, one of the output options for illumina's
workflow, also added cookbook demo.
- added functionality for parsing of SFF files without the Roche tools in
cogent.parse.binary_sff
- thousand fold performance improvement to nmds
- >10-fold performance improvements to some Table operations
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Accepted:
python-cogent_1.5-1.debian.tar.gz
to non-free/p/python-cogent/python-cogent_1.5-1.debian.tar.gz
python-cogent_1.5-1.dsc
to non-free/p/python-cogent/python-cogent_1.5-1.dsc
python-cogent_1.5-1_amd64.deb
to non-free/p/python-cogent/python-cogent_1.5-1_amd64.deb
python-cogent_1.5.orig.tar.gz
to non-free/p/python-cogent/python-cogent_1.5.orig.tar.gz
