-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Format: 1.7 Date: Wed, 13 Feb 2008 15:01:50 -0800 Source: gromacs Binary: gromacs-openmpi gromacs gromacs-lam gromacs-dev gromacs-mpich gromacs-doc Architecture: source all i386 Version: 3.3.3~pre1-1 Distribution: unstable Urgency: low Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org> Changed-By: Nicholas Breen <nbreen@ofb.net> Description: gromacs - Molecular dynamics simulator, with building and analysis tools gromacs-dev - GROMACS molecular dynamics sim, development kit gromacs-doc - GROMACS molecular dynamics sim, documentation gromacs-lam - Molecular dynamics sim, binaries for LAM-MPI parallelization gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization Changes: gromacs (3.3.3~pre1-1) unstable; urgency=low . [ Nicholas Breen ] * New upstream release. - Remove obsolete patches now incorporated upstream: 50_xtcio_double_range_checking, 51_180_degree_angle, 52_pme_spline, 53_pbc_compiler. * debian/rules: - Clean up patch syntax to prevent double compilations. - Add .NOTPARALLEL target to prevent the various MPI builds from compiling on the same source tree simultaneously, while still allowing -j options to be passed to sublevel targets. - Improve DEB_BUILD_OPTIONS=parallel=X handling, now in line with the example proposed for policy. - Disable FORTRAN inner loops for gromacs-openmpi on alpha. This is a temporary workaround to avoid lingering linking problems regarding libmpi.so and the update-alternatives system. - Add support for DEB_BUILD_OPTIONS=noopt. - Additional rewrite work (see below): use new format for build commands, but split for individual MPI implementations. - Run autotools between patch and configuration steps. - New format for MPI library suffix configuration. * debian/control: - Add versioned Build-Depends on libmpich1.0-dev for its g77 -> gfortran transition. - Add Build-Depends on autoconf and automake, and Build-Conflicts on autoconf2.13, to support updated mpisuffix patch. - Downgrade gromacs-doc Depends: on gromacs to a Recommends:, as -doc now ships its own copyright file. * debian/patches/04_autoconf_mpisuffix.dpatch: Apply dleidert's improved patch to allow arbitrary overrides of LIBSUFFIX; reduce patch to only the directly changed code in configure.ac, and add an invocation of autotools during the build process rather than patching configure itself directly. * debian/gromacs-{doc,dev}.preinst: Remove symlinks for package doc directories on upgrade, in order to replace them with actual directories. . [ Daniel Leidert ] * debian/control (Suggests): Fixed a debcheck issue - gromacs-openmpi should only be suggested on supported architectures. * debian/copyright: Added copyright information to satisfy lintian. * debian/gromacs-doc.doc-base (Section): Fixed accordingly to menu policy. (Format): Fixed path to HTML files. * debian/rules: Major rewrite. Changes/improvements include: - drop dpatch target definitions in favour of dpatch.make - put all configure flags to the top of the file - moved all configure related commands into configure-stamp - moved all build related commands into build-stamp - moved all install related commands into separate install targets - configure and build in sub-directories to avoid $(MAKE) clean calls - clean target removes build/ instead to run clean/distclean - replaced ln with dh_link and gzip with dh_installman - adjusted target requirements for binary* and install* - install a /usr/share/doc/$package directory for gromacs-doc and -dev too; put the HTML into the -doc documentation directory; add links to the HTML directory for the gromacs and the -dev package pointing to the -doc directory - fixed .PHONY target for above * debian/watch: Added pre-release version handling. 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