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Hash: SHA1
Format: 1.8
Date: Mon, 05 Oct 2009 10:55:32 +0200
Source: massxpert
Binary: massxpert massxpert-data massxpert-doc
Architecture: source all i386
Version: 2.0.6.-1
Distribution: unstable
Urgency: low
Maintainer: The Debichem Group <debichem-devel@lists.alioth.debian.org>
Changed-By: Filippo Rusconi <rusconi-debian@laposte.net>
Description:
massxpert - linear polymer mass spectrometry software
massxpert-data - linear polymer mass spectrometry software - arch-indep data
massxpert-doc - Linear polymer mass spectrometry software - manual
Changes:
massxpert (2.0.6.-1) unstable; urgency=low
.
* Upstream release:
.
- Fixes to nroff formatting of the man pages (thanks to Daniel Leidert
for suggestions);
.
- XpertCalc: added possibility to insert formulas in the formula line
edit by Ctrl-clicking buttons in the chemical keypad;
.
- XpertCalc: added possibility to surround formulas with spaces for
much better readability in case of complex structures. This is
performed by Shit-Ctrl-cliking on the chemical pad buttons;
.
- XpertCalc: automatically seed m/z calculation dialog window with
masses from the XpertCalc main window;
.
- XpertEdit: bug fix in the sequence editor's feedback to the user
upon entering a bad monomer code character. When a new valid character
is entered this old error message is removed;
.
- XpertCalc: added lots of useful buttons to the dna chemical pad
configuration file;
.
- Added bibliographical reference to the massXpert paper in
_Bioinformatics_ to the man pages;
.
- XpertCalc: added possibility to store formula in a drop-down list so
as to be able to recall them in ulterior calculations;
.
- XpertCalc: implemented new feature by which it is possible to set a
title to a formula like the following : "initial-dimer" C5H6O9P3,
which will be interpreted as formula "C5H6O9P3".
.
- Sequence editing plugins: added possibility to perform more
sophisticated translation, like from codon to 1-letter code or from
codon to 3-letters code (protein chemistry);
.
- XpertEdit: the tool box (available monomers/mass calculation engine
configuration) now saves its position;
.
- Improved the CMake-based build system to automatically build the
binary and the data if nothing is specified on the configuration
command line (usermanual is not built by default; thanks to Pere
Constans for reporting);
.
- Bunch of code tidying and memory leaks fixing (thanks to cppcheck,
as suggested by Pere Constans);
.
- XpertEdit: fixed wrong behaviour in the whole/selected sequence
logic in the mass search dialog window;
.
- XpertEdit: fixed the multi-character code disambiguation mechanism
in the sequence editor's available codes tool box widget: it's
triggered by hitting Ctrl-Enter;
.
- Xpertedit/XpertDef: improved feedback to the user on file save
operation errors;
.
- XpertEdit/XpertDef: added possibility to show non-*.mxp/non-*.xml
files in the openfile dialogs;
.
- XpertEdit: improved fragmentation with multiply-charged fragments:
When there are multiply-charged fragments, the mass now takes into
account the ionization rule that sits in the sequence editor windows's
calculation engine configuration.
.
- Added Doxygen configuration file. Docs generated outside of the
source tree.
.
- XpertEdit: fix bug in elementalComposition() that would fail when
count is negative. Added simplify() function that calls
elementalComposition() in turn. Also fixed the way atomCount objects
are added to the list of such objects : when an atomCount object
reaches a 0-count, it gets removed from the list.
.
- XpertCalc: added possibility to simplify a complex set of formulas
into a single factorized formula.
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Files:
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Accepted:
massxpert-data_2.0.6.-1_all.deb
to pool/main/m/massxpert/massxpert-data_2.0.6.-1_all.deb
massxpert-doc_2.0.6.-1_all.deb
to pool/main/m/massxpert/massxpert-doc_2.0.6.-1_all.deb
massxpert_2.0.6.-1.dsc
to pool/main/m/massxpert/massxpert_2.0.6.-1.dsc
massxpert_2.0.6.-1.tar.gz
to pool/main/m/massxpert/massxpert_2.0.6.-1.tar.gz
massxpert_2.0.6.-1_i386.deb
to pool/main/m/massxpert/massxpert_2.0.6.-1_i386.deb
